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| Main Authors: | , , , , , , , , , , , , , , |
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| Format: | Artículo científico |
| Language: | en |
| Published: |
Wellcome open research
2025
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| Online Access: | https://pubmed.ncbi.nlm.nih.gov/41312302/ |
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| author | Steindler, Laura Maldonado, Manuel Pita, Lucia Riesgo, Ana Erpenbeck, Dirk Hentschel, Ute Oatley, Graeme Sinclair, Elizabeth Aunin, Eerik Gettle, Noah Santos, Camilla Paulini, Michael Niu, Haoyu McKenna, Victoria O'Brien, Rebecca |
| author_facet | Steindler, Laura Maldonado, Manuel Pita, Lucia Riesgo, Ana Erpenbeck, Dirk Hentschel, Ute Oatley, Graeme Sinclair, Elizabeth Aunin, Eerik Gettle, Noah Santos, Camilla Paulini, Michael Niu, Haoyu McKenna, Victoria O'Brien, Rebecca Steindler, Laura Maldonado, Manuel Pita, Lucia Riesgo, Ana Erpenbeck, Dirk Hentschel, Ute Oatley, Graeme Sinclair, Elizabeth Aunin, Eerik Gettle, Noah Santos, Camilla Paulini, Michael Niu, Haoyu McKenna, Victoria O'Brien, Rebecca |
| collection | PubMed - marine biology |
| contents | The chromosomal genome sequence of the stone sponge (Poiret, 1789) and its associated microbial metagenome sequences. Steindler, Laura Maldonado, Manuel Pita, Lucia Riesgo, Ana Erpenbeck, Dirk Hentschel, Ute Oatley, Graeme Sinclair, Elizabeth Aunin, Eerik Gettle, Noah Santos, Camilla Paulini, Michael Niu, Haoyu McKenna, Victoria O'Brien, Rebecca We present a genome assembly from an individual (stone sponge; Porifera; Demospongiae; Haplosclerida; Petrosiidae). The genome sequence is 191.3 megabases in span. Most of the assembly is scaffolded into 18 chromosomal pseudomolecules. The mitochondrial genome has also been assembled and is 18.89 kilobases in length. Gene annotation of the host organism assembly identified 18,339 protein coding genes. The metagenome of the specimen was also assembled, and 112 binned bacterial genomes were identified, including 57 high-quality MAGs. Besides MAGs characteristic of HMA sponge symbionts (i.e., Chloroflexota, Acidobacteriota), the specific symbiont Synechococcus feldmanni (formerly (Cyanobacteriota) was recovered, as well as notably MAGs of several candidate phyla ( Latescibacteria, Poribacteria, Tectomicrobia, Dadabacteria, Kapabacteria and Binatia). |
| format | Artículo científico |
| id | pubmed_41312302 |
| institution | PubMed |
| language | en |
| publishDate | 2025 |
| publisher | Wellcome open research |
| record_format | pubmed |
| spellingShingle | The chromosomal genome sequence of the stone sponge (Poiret, 1789) and its associated microbial metagenome sequences. Steindler, Laura Maldonado, Manuel Pita, Lucia Riesgo, Ana Erpenbeck, Dirk Hentschel, Ute Oatley, Graeme Sinclair, Elizabeth Aunin, Eerik Gettle, Noah Santos, Camilla Paulini, Michael Niu, Haoyu McKenna, Victoria O'Brien, Rebecca The chromosomal genome sequence of the stone sponge (Poiret, 1789) and its associated microbial metagenome sequences. Steindler, Laura Maldonado, Manuel Pita, Lucia Riesgo, Ana Erpenbeck, Dirk Hentschel, Ute Oatley, Graeme Sinclair, Elizabeth Aunin, Eerik Gettle, Noah Santos, Camilla Paulini, Michael Niu, Haoyu McKenna, Victoria O'Brien, Rebecca We present a genome assembly from an individual (stone sponge; Porifera; Demospongiae; Haplosclerida; Petrosiidae). The genome sequence is 191.3 megabases in span. Most of the assembly is scaffolded into 18 chromosomal pseudomolecules. The mitochondrial genome has also been assembled and is 18.89 kilobases in length. Gene annotation of the host organism assembly identified 18,339 protein coding genes. The metagenome of the specimen was also assembled, and 112 binned bacterial genomes were identified, including 57 high-quality MAGs. Besides MAGs characteristic of HMA sponge symbionts (i.e., Chloroflexota, Acidobacteriota), the specific symbiont Synechococcus feldmanni (formerly (Cyanobacteriota) was recovered, as well as notably MAGs of several candidate phyla ( Latescibacteria, Poribacteria, Tectomicrobia, Dadabacteria, Kapabacteria and Binatia). |
| title | The chromosomal genome sequence of the stone sponge (Poiret, 1789) and its associated microbial metagenome sequences. |
| url | https://pubmed.ncbi.nlm.nih.gov/41312302/ |