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| Natura: | Artículo científico |
| Lingua: | en |
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Molecular ecology resources
2026
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| Accesso online: | https://pubmed.ncbi.nlm.nih.gov/41560422/ |
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| author | Reichel, Katja Pohjoismäki, Jaakko Astrin, Jonas J Böhne, Astrid Bortoluzzi, Chiara Bužan, Elena Del Campo, Javier Ciofi, Claudio Di-Nizo, Camilla B Divakar, Pradeep K Greve, Carola Hampl, Vladimír Hilgers, Leon Laine, Veronika N Leonard, Jennifer A Lozano-Fernandez, Jesus Lukić Bilela, Lada Mazzoni, Camila J McCartney, Ann M Melo-Ferreira, José Monteiro, Rita Oomen, Rebekah A Pavlek, Martina Pimenta, João Rindos, Michal Seehausen, Ole Tarieiev, Andrii Tomasello, Salvatore Vinnere Pettersson, Olga Waterhouse, Robert M Weber, Alexandra A-T Zinenko, Oleksandr de Guttry, Christian |
| author_facet | Reichel, Katja Pohjoismäki, Jaakko Astrin, Jonas J Böhne, Astrid Bortoluzzi, Chiara Bužan, Elena Del Campo, Javier Ciofi, Claudio Di-Nizo, Camilla B Divakar, Pradeep K Greve, Carola Hampl, Vladimír Hilgers, Leon Laine, Veronika N Leonard, Jennifer A Lozano-Fernandez, Jesus Lukić Bilela, Lada Mazzoni, Camila J McCartney, Ann M Melo-Ferreira, José Monteiro, Rita Oomen, Rebekah A Pavlek, Martina Pimenta, João Rindos, Michal Seehausen, Ole Tarieiev, Andrii Tomasello, Salvatore Vinnere Pettersson, Olga Waterhouse, Robert M Weber, Alexandra A-T Zinenko, Oleksandr de Guttry, Christian Reichel, Katja Pohjoismäki, Jaakko Astrin, Jonas J Böhne, Astrid Bortoluzzi, Chiara Bužan, Elena Del Campo, Javier Ciofi, Claudio Di-Nizo, Camilla B Divakar, Pradeep K Greve, Carola Hampl, Vladimír Hilgers, Leon Laine, Veronika N Leonard, Jennifer A Lozano-Fernandez, Jesus Lukić Bilela, Lada Mazzoni, Camila J McCartney, Ann M Melo-Ferreira, José Monteiro, Rita Oomen, Rebekah A Pavlek, Martina Pimenta, João Rindos, Michal Seehausen, Ole Tarieiev, Andrii Tomasello, Salvatore Vinnere Pettersson, Olga Waterhouse, Robert M Weber, Alexandra A-T Zinenko, Oleksandr de Guttry, Christian |
| collection | PubMed - marine biology |
| contents | From Permits to Samples: Addressing Key Challenges for High-Quality Reference Genome Generation in Europe. Reichel, Katja Pohjoismäki, Jaakko Astrin, Jonas J Böhne, Astrid Bortoluzzi, Chiara Bužan, Elena Del Campo, Javier Ciofi, Claudio Di-Nizo, Camilla B Divakar, Pradeep K Greve, Carola Hampl, Vladimír Hilgers, Leon Laine, Veronika N Leonard, Jennifer A Lozano-Fernandez, Jesus Lukić Bilela, Lada Mazzoni, Camila J McCartney, Ann M Melo-Ferreira, José Monteiro, Rita Oomen, Rebekah A Pavlek, Martina Pimenta, João Rindos, Michal Seehausen, Ole Tarieiev, Andrii Tomasello, Salvatore Vinnere Pettersson, Olga Waterhouse, Robert M Weber, Alexandra A-T Zinenko, Oleksandr de Guttry, Christian Europe Specimen Handling Sequence Analysis, DNA Genomics Genome High-quality reference genome assemblies have become essential for deepening our understanding of biodiversity, yet obtaining them for many species remains surprisingly challenging. Drawing on experiences from the European Reference Genome Atlas (ERGA) community, we focus on permit and sample-handling procedures leading up to nucleic acid sequencing, covering tasks such as ensuring ethical and legal compliance, verifying accurate species identification, maintaining sample integrity during transport, and isolating high-quality DNA or nuclei. While many of the challenges and solutions we discuss are broadly relevant, our regulatory and logistical examples are primarily from Europe. By synthesising practical guidance, we highlight the crucial importance of taxonomic expertise, proper vouchering and biobanking, rigorous cold-chain management or alternative preservation methods, and emphasise adherence to packaging and shipping requirements for biological materials. We showcase examples spanning diverse regions, taxa and source materials, which underscore the importance of context-specific strategies and internationally harmonised protocols, particularly for metadata reporting. Our recommendations aim to support both small-scale projects and large initiatives, directing collective efforts to facilitate efficient sampling, vouchering and sample processing for future genomic studies. |
| format | Artículo científico |
| id | pubmed_41560422 |
| institution | PubMed |
| language | en |
| publishDate | 2026 |
| publisher | Molecular ecology resources |
| record_format | pubmed |
| spellingShingle | From Permits to Samples: Addressing Key Challenges for High-Quality Reference Genome Generation in Europe. Reichel, Katja Pohjoismäki, Jaakko Astrin, Jonas J Böhne, Astrid Bortoluzzi, Chiara Bužan, Elena Del Campo, Javier Ciofi, Claudio Di-Nizo, Camilla B Divakar, Pradeep K Greve, Carola Hampl, Vladimír Hilgers, Leon Laine, Veronika N Leonard, Jennifer A Lozano-Fernandez, Jesus Lukić Bilela, Lada Mazzoni, Camila J McCartney, Ann M Melo-Ferreira, José Monteiro, Rita Oomen, Rebekah A Pavlek, Martina Pimenta, João Rindos, Michal Seehausen, Ole Tarieiev, Andrii Tomasello, Salvatore Vinnere Pettersson, Olga Waterhouse, Robert M Weber, Alexandra A-T Zinenko, Oleksandr de Guttry, Christian Europe Specimen Handling Sequence Analysis, DNA Genomics Genome From Permits to Samples: Addressing Key Challenges for High-Quality Reference Genome Generation in Europe. Reichel, Katja Pohjoismäki, Jaakko Astrin, Jonas J Böhne, Astrid Bortoluzzi, Chiara Bužan, Elena Del Campo, Javier Ciofi, Claudio Di-Nizo, Camilla B Divakar, Pradeep K Greve, Carola Hampl, Vladimír Hilgers, Leon Laine, Veronika N Leonard, Jennifer A Lozano-Fernandez, Jesus Lukić Bilela, Lada Mazzoni, Camila J McCartney, Ann M Melo-Ferreira, José Monteiro, Rita Oomen, Rebekah A Pavlek, Martina Pimenta, João Rindos, Michal Seehausen, Ole Tarieiev, Andrii Tomasello, Salvatore Vinnere Pettersson, Olga Waterhouse, Robert M Weber, Alexandra A-T Zinenko, Oleksandr de Guttry, Christian Europe Specimen Handling Sequence Analysis, DNA Genomics Genome High-quality reference genome assemblies have become essential for deepening our understanding of biodiversity, yet obtaining them for many species remains surprisingly challenging. Drawing on experiences from the European Reference Genome Atlas (ERGA) community, we focus on permit and sample-handling procedures leading up to nucleic acid sequencing, covering tasks such as ensuring ethical and legal compliance, verifying accurate species identification, maintaining sample integrity during transport, and isolating high-quality DNA or nuclei. While many of the challenges and solutions we discuss are broadly relevant, our regulatory and logistical examples are primarily from Europe. By synthesising practical guidance, we highlight the crucial importance of taxonomic expertise, proper vouchering and biobanking, rigorous cold-chain management or alternative preservation methods, and emphasise adherence to packaging and shipping requirements for biological materials. We showcase examples spanning diverse regions, taxa and source materials, which underscore the importance of context-specific strategies and internationally harmonised protocols, particularly for metadata reporting. Our recommendations aim to support both small-scale projects and large initiatives, directing collective efforts to facilitate efficient sampling, vouchering and sample processing for future genomic studies. |
| title | From Permits to Samples: Addressing Key Challenges for High-Quality Reference Genome Generation in Europe. |
| topic | Europe Specimen Handling Sequence Analysis, DNA Genomics Genome |
| url | https://pubmed.ncbi.nlm.nih.gov/41560422/ |