Buchumschlag

From classification to confirmation: verifying taxonomic classifications by mapping metagenomic reads to reference genomes.

Fuente: PubMed

Gespeichert in:

Bibliographische Detailangaben
Hauptverfasser:	Wright, Robyn J, Fisher, Benjamin R, Comeau, André M, Langille, Morgan G I
Format:	Artículo científico
Sprache:	en
Veröffentlicht:	Microbial genomics 2026
Schlagworte:	Metagenomics Humans Metagenome Bacteria Genome, Bacterial Sequence Analysis, DNA Computational Biology Microbiota
Online-Zugang:	Acceder al recurso
Tags:	Tag hinzufügen Keine Tags, Fügen Sie den ersten Tag hinzu!

Ähnliche Einträge

Targeted analysis of metagenomes: divide and conquer.
von: Valmas, Marios I, et al.
Veröffentlicht: (2025)

Candidate Phyla Radiation (CPR) bacteria from hyperalkaline ecosystems provide novel insight into their symbiotic lifestyle and ecological implications.
von: He, Yu, et al.
Veröffentlicht: (2025)

Microbial model communities exhibit widespread metabolic interdependencies.
von: Pacheco-Valenciana, Armando, et al.
Veröffentlicht: (2025)

A curated protein dataset for taxonomic classification of Prochlorococcus and Synechococcus in metagenomes.
von: Coe, Allison, et al.
Veröffentlicht: (2025)

35 metagenomic datasets from the northern and southern parts of the Yap trench sediments.
von: Niu, Mingyang, et al.
Veröffentlicht: (2026)

A holistic genome dataset of bacteria and archaea of mangrove sediments.
von: Pan, Shijun, et al.
Veröffentlicht: (2025)

Genome-scale metabolic modelling reveals interactions and key roles of symbiont clades in a sponge holobiont.
von: Zhang, Shan, et al.
Veröffentlicht: (2024)

Two decades of bacterial ecology and evolution in a freshwater lake.
von: Rohwer, Robin R, et al.
Veröffentlicht: (2025)

Low functional change despite high taxonomic turnover characterizes the microbiome across a 2000-km salinity gradient.
von: van der Loos, Luna M, et al.
Veröffentlicht: (2025)

Forces Shaping Diversity of Hydrogen Peroxide Detoxification Potential in Ocean Microbial Ecosystems.
von: Goldberg, Hannah, et al.
Veröffentlicht: (2026)

Phenazines contribute to microbiome dynamics by targeting topoisomerase IV.
von: Zhou, Yaqi, et al.
Veröffentlicht: (2025)

Metagenomic analysis of deep-sea bacterial communities in the Makassar and Lombok Straits.
von: Siallagan, Zen Ladestam, et al.
Veröffentlicht: (2024)

Metabarcoding and metagenomic data across aquatic environmental gradients along the coasts of France and Chile.
von: Maeke, Mara D, et al.
Veröffentlicht: (2026)

Reference genome for the benthic marine diatom Psammoneis japonica: Bacterial associations and repeat-driven genome size evolution in diatoms.
von: Roberts, Wade R, et al.
Veröffentlicht: (2025)

Widely-distributed freshwater microorganisms with streamlined genomes co-occur in cohorts with high abundance.
von: Rodríguez-Gijón, Alejandro, et al.
Veröffentlicht: (2025)

Unearthing the genetic resources of Arabian sea seamount and metagenomic insights into phosphate cycling genes for next generation plant biostimulants.
von: Balachandran, Karpaga Raja Sundari, et al.
Veröffentlicht: (2025)

Understanding Hepatopancreas-Associated Microbiota in the Supralittoral Tylos ponticus (Crustacea, Isopoda, Oniscidea): Insights from Next-Generation Sequencing Approaches.
von: Davolos, Domenico, et al.
Veröffentlicht: (2026)

High-quality genome assembly and annotation of Thalassiosira rotula (synonym of Thalassiosira gravida).
von: Di Costanzo, F, et al.
Veröffentlicht: (2025)

Ocean-M: an integrated global-scale multi-omics database for marine microbial diversity, function and ecological interactions.
von: Lv, Jia, et al.
Veröffentlicht: (2026)

High microbial diversity, functional redundancy, and prophage enrichment support the success of the yellow pencil coral, in Curaçao's coral reefs.
von: Wallace, Bailey A, et al.
Veröffentlicht: (2025)

Metagenomics of the MAST-3 stramenopile, , and its associated microbiome reveals unexpected metabolic attributes and extensive nutrient dependencies.
von: Absolon, Dominic E, et al.
Veröffentlicht: (2025)

Metagenome assembled genomes revealed the influences of mariculture and seagrass species on the microbiomes in seawater and rhizosphere biotopes.
von: Sun, Hao, et al.
Veröffentlicht: (2026)

Nitrogen fixation in Pampinifervens, a new species-rich genus of Aquificaceae that inhabits a wide pH range in terrestrial hot springs.
von: Palmer, Marike, et al.
Veröffentlicht: (2025)

Sulfated mannan of diatoms selects host-specific microbiota in the sunlit ocean.
von: Krull, J, et al.
Veröffentlicht: (2026)

Quantifying antibiotic resistome risks across environmental niches: the L-ARRAP for long-read metagenomic profiling.
von: Li, Yongxin, et al.
Veröffentlicht: (2025)

Establishing the ELIXIR Microbiome Community.
von: Finn, Robert D, et al.
Veröffentlicht: (2024)

Long-read nanopore shotgun metagenomic DNA sequencing for river biodiversity, wildlife, pollution, and environmental health monitoring.
von: Nousias, Orestis, et al.
Veröffentlicht: (2026)

New SAR11 isolate genomes and global marine metagenomes resolve ecologically relevant units within the Pelagibacterales.
von: Freel, Kelle C, et al.
Veröffentlicht: (2025)

Probe Capture Enrichment Sequencing of amoA Genes Improves the Detection of Diverse Ammonia-Oxidising Archaeal and Bacterial Populations.
von: Hiraoka, Satoshi, et al.
Veröffentlicht: (2025)

Taxonomic and Functional Features of Surface to Deep-Sea Prokaryotic Communities in the Eastern North Pacific Ocean.
von: De Corte, Daniele, et al.
Veröffentlicht: (2025)

Unbinned contigs expand known diversity in the global microbiome.
von: Prasoodanan Pk, Vishnu, et al.
Veröffentlicht: (2026)

Machine learning models for delineating marine microbial taxa.
von: Louca, Stilianos
Veröffentlicht: (2025)

Dynamics and Eco-Genomics of Baltic Sea Nitrifiers: Seasonality, Niches, Interactions and Genomic Uniqueness.
von: Kim, Sukki Sookyoung, et al.
Veröffentlicht: (2026)

Promiscuous and genome-wide recombination underlies the sequence-discrete species of the SAR11 lineage in the deep ocean.
von: Zhao, Jianshu, et al.
Veröffentlicht: (2025)

Guidelines for preventing and reporting contamination in low-biomass microbiome studies.
von: Fierer, Noah, et al.
Veröffentlicht: (2025)

A Step-by-Step Guide to Sequencing and Assembly of Complete Bacterial Genomes Using the Oxford Nanopore MinION.
von: Kumar, Anil, et al.
Veröffentlicht: (2025)

Evolutionary history and association with seaweeds shape the genomes and metabolisms of marine bacteria.
von: Pfister, Catherine A, et al.
Veröffentlicht: (2025)

Anaerobic breviate protist survival in microcosms depends on microbiome metabolic function.
von: Aguilera-Campos, Karla Iveth, et al.
Veröffentlicht: (2025)

Temporal and Spatial Dynamics of Microbial Community Composition and Functional Potential in Mangrove Wetlands over a Seven-Year Period.
von: Qi, Yan-Ling, et al.
Veröffentlicht: (2025)

A Targeted Reference Database for Improved Analysis of Environmental 16S rRNA Oxford Nanopore Sequencing Data.
von: Philip, Melcy, et al.
Veröffentlicht: (2025)