Energy, water, and protein folding: A molecular dynamics‐based quantitative inventory of molecular interactions and forces that make proteins stable
Fuente:
Wiley Open Access
Saved in:
| Main Authors: | Juan José Galano‐Frutos, Javier Sancho |
|---|---|
| Format: | Artículo Open Access |
| Published: |
Wiley
2024
|
| Subjects: | |
| Online Access: | |
| Tags: |
Add Tag
No Tags, Be the first to tag this record!
|
Similar Items
Glycopolymers stabilize protein folding and protein–protein interactions via enthalpic interactions
by: Sabrina M. Richter, et al.
Published: (2025)
by: Sabrina M. Richter, et al.
Published: (2025)
Correlating membrane‐protein dynamics with function: Integrating bioinformatics, molecular dynamics, and single‐molecule FRET
by: Hugh R. Higinbotham, et al.
Published: (2025)
by: Hugh R. Higinbotham, et al.
Published: (2025)
Mapping the energy landscape of a fold‐switching protein MAD2
by: Ander F. Pereira, et al.
Published: (2025)
by: Ander F. Pereira, et al.
Published: (2025)
Unveiling the molecular mechanism of Gi protein biased activation at mGlu2–mGlu4 heterodimers through Gaussian accelerated molecular dynamics simulations
by: Baoyu He, et al.
Published: (2025)
by: Baoyu He, et al.
Published: (2025)
Predicting absolute protein folding stability using generative models
by: Matteo Cagiada, et al.
Published: (2024)
by: Matteo Cagiada, et al.
Published: (2024)
A significance score for protein–protein interaction models through random docking
by: Katherine Maia McCoy, et al.
Published: (2024)
by: Katherine Maia McCoy, et al.
Published: (2024)
Comparative analysis of the extent of protein–protein interactions in icosahedral viral capsids
by: Noah J. Zimmerman, et al.
Published: (2025)
by: Noah J. Zimmerman, et al.
Published: (2025)
Heterogeneous folding landscapes and predetermined breaking points within a protein family
by: Sebastian Pechmann
Published: (2024)
by: Sebastian Pechmann
Published: (2024)
Molecular mechanisms of chaperone‐directed protein folding: Insights from atomistic simulations
by: Matteo Castelli, et al.
Published: (2024)
by: Matteo Castelli, et al.
Published: (2024)
Chemical and temporal manipulation of early steps in protein assembly tunes the structure and intermolecular interactions of protein‐based materials
by: Valeria Italia, et al.
Published: (2025)
by: Valeria Italia, et al.
Published: (2025)
Cell surface β‐lactamase recruitment: A facile selection to identify protein–protein interactions
by: Jordan A. Hinmon, et al.
Published: (2024)
by: Jordan A. Hinmon, et al.
Published: (2024)
Inhibitory protein–protein interactions of the SIRT1 deacetylase are choreographed by post‐translational modification
by: Troy C. Krzysiak, et al.
Published: (2024)
by: Troy C. Krzysiak, et al.
Published: (2024)
Allosteric regulation of the tyrosine phosphatase PTP1B by a protein–protein interaction
by: Cassandra A. Chartier, et al.
Published: (2024)
by: Cassandra A. Chartier, et al.
Published: (2024)
Solid‐state NMR protocols for unveiling dynamics and (drug) interactions of membrane‐bound proteins
by: Alessia Lasorsa, et al.
Published: (2025)
by: Alessia Lasorsa, et al.
Published: (2025)
Intermediate heterogeneity modulates coupling between chain compaction and structure formation during protein folding
by: Anushka Kaushik, et al.
Published: (2026)
by: Anushka Kaushik, et al.
Published: (2026)
The double histone fold: Structure, functional implications across the tree of life and relevance to protein design
by: Anna Ranaudo, et al.
Published: (2026)
by: Anna Ranaudo, et al.
Published: (2026)
MAGPIE: An interactive tool for visualizing and analyzing protein–ligand interactions
by: Daniel C. Pineda Rodriguez, et al.
Published: (2024)
by: Daniel C. Pineda Rodriguez, et al.
Published: (2024)
Screening microorganisms with robust and stable protein expression and secretion capacity
by: Li‐Hua Liu, et al.
Published: (2024)
by: Li‐Hua Liu, et al.
Published: (2024)
MemPPI platform for measuring and engineering membrane protein–protein interactions in mammalian cells via split nanoluciferase
by: Weiyi Tang, et al.
Published: (2026)
by: Weiyi Tang, et al.
Published: (2026)
NumSimEX: A method using EXX hydrogen exchange mass spectrometry to map the energetics of protein folding landscapes
by: Jasper A. G. Flint, et al.
Published: (2025)
by: Jasper A. G. Flint, et al.
Published: (2025)
Unlocking complexity through neutron scattering: Structure and dynamics of protein–polymer conjugates
by: Daniela Russo, et al.
Published: (2025)
by: Daniela Russo, et al.
Published: (2025)
4‐Thiaproline accelerates the slow folding phase of proteins containing cis prolines in the native state by two orders of magnitude
by: Jennie O' Loughlin, et al.
Published: (2024)
by: Jennie O' Loughlin, et al.
Published: (2024)
Identifying and quantifying membrane interactions of the protein human cis ‐prenyltransferase
by: Duncan M. Boren, et al.
Published: (2025)
by: Duncan M. Boren, et al.
Published: (2025)
Enhanced secretion through type 1 secretion system by grafting a calcium‐binding sequence to modify the folding of cargo proteins
by: Ryo Uehara, et al.
Published: (2025)
by: Ryo Uehara, et al.
Published: (2025)
The intrinsically disordered protein NUPR1 binds to phospholipids
by: Matías Estaras, et al.
Published: (2025)
by: Matías Estaras, et al.
Published: (2025)
Key interaction networks: Identifying evolutionarily conserved non‐covalent interaction networks across protein families
by: Dariia Yehorova, et al.
Published: (2024)
by: Dariia Yehorova, et al.
Published: (2024)
Toward physics‐based precision medicine: Exploiting protein dynamics to design new therapeutics and interpret variants
by: Artur Meller, et al.
Published: (2024)
by: Artur Meller, et al.
Published: (2024)
How sensitive are protein hydration shells to electrolyte concentration and protein composition?
by: H. Geraili Daronkola, et al.
Published: (2024)
by: H. Geraili Daronkola, et al.
Published: (2024)
PackPPI: An integrated framework for protein–protein complex side‐chain packing and ΔΔG prediction based on diffusion model
by: Jingkai Zhang, et al.
Published: (2025)
by: Jingkai Zhang, et al.
Published: (2025)
An intein‐based biosensor to measure protein stability in vivo
by: Ahyun Son, et al.
Published: (2024)
by: Ahyun Son, et al.
Published: (2024)
O‐GlcNAc modification of HSP27 alters its protein interactions and promotes refolding of proteins through the BAG3/HSP70 co‐chaperone
by: Afraah Javed, et al.
Published: (2024)
by: Afraah Javed, et al.
Published: (2024)
AlphaFold‐driven discovery of oxysterol‐binding protein ‐ related protein‐phosphoinositide 3‐, 4‐, and 5‐phosphatase interactions using new generation confidence scores
by: Filippo Dall'Armellina, et al.
Published: (2026)
by: Filippo Dall'Armellina, et al.
Published: (2026)
Theta‐curves in proteins
by: Pawel Dabrowski‐Tumanski, et al.
Published: (2024)
by: Pawel Dabrowski‐Tumanski, et al.
Published: (2024)
19F NMR‐based solvent accessibility profiling reveals tryptophan ring‐flip dynamics in a protein
by: Soichiro Kawagoe, et al.
Published: (2025)
by: Soichiro Kawagoe, et al.
Published: (2025)
Predicting protein-protein interaction with interpretable bilinear attention network.
by: Han, Yong, et al.
Published: (2025)
by: Han, Yong, et al.
Published: (2025)
MAVISp : A modular structure‐based framework for protein variant effects
by: Matteo Arnaudi, et al.
Published: (2026)
by: Matteo Arnaudi, et al.
Published: (2026)
The importance of input sequence set to consensus‐derived proteins and their relationship to reconstructed ancestral proteins
by: Charlotte Nixon, et al.
Published: (2024)
by: Charlotte Nixon, et al.
Published: (2024)
Predicting compatibility between ferredoxins and the Fe protein of nitrogenase using in silico protein modeling
by: Adity Biswas, et al.
Published: (2026)
by: Adity Biswas, et al.
Published: (2026)
Investigation of the structure of protein–polymer conjugates in solution reveals the impact of protein deuteration and the size of the polymer on its thermal stability
by: Daniela Russo, et al.
Published: (2024)
by: Daniela Russo, et al.
Published: (2024)
Role of UDP‐N‐acetylmuramic acid in the regulation of MurA activity revealed by molecular dynamics simulations
by: Maycon Vinicius Damasceno de Oliveira, et al.
Published: (2024)
by: Maycon Vinicius Damasceno de Oliveira, et al.
Published: (2024)
Similar Items
-
Glycopolymers stabilize protein folding and protein–protein interactions via enthalpic interactions
by: Sabrina M. Richter, et al.
Published: (2025) -
Correlating membrane‐protein dynamics with function: Integrating bioinformatics, molecular dynamics, and single‐molecule FRET
by: Hugh R. Higinbotham, et al.
Published: (2025) -
Mapping the energy landscape of a fold‐switching protein MAD2
by: Ander F. Pereira, et al.
Published: (2025) -
Unveiling the molecular mechanism of Gi protein biased activation at mGlu2–mGlu4 heterodimers through Gaussian accelerated molecular dynamics simulations
by: Baoyu He, et al.
Published: (2025) -
Predicting absolute protein folding stability using generative models
by: Matteo Cagiada, et al.
Published: (2024)