Imagen de Portada

Folding of a tandemly knotted protein: Evidence that a polypeptide chain can get out of deep kinetic traps

Fuente: Wiley Open Access

Guardado en:

Detalles Bibliográficos
Autores principales:	Hongyu Zhang, Sophie E. Jackson
Formato:	Artículo Open Access
Publicado:	Wiley 2025
Materias:	Protein Science
Acceso en línea:	Acceder al recurso
Etiquetas:	Agregar Etiqueta Sin Etiquetas, Sea el primero en etiquetar este registro!

Ejemplares similares

Assessing scoring metrics for AlphaFold2 and AlphaFold3 protein complex predictions
por: Luca R. Genz, et al.
Publicado: (2025)

Training bias and sequence alignments shape protein–peptide docking by AlphaFold and related methods
por: Lindsey Guan, et al.
Publicado: (2025)

ConforFold recovers alternative protein conformations beyond MSA subsampling
por: Raulia Syrlybaeva, et al.
Publicado: (2026)

Human islet amyloid polypeptide‐induced β‐cell cytotoxicity is linked to formation of α‐sheet structure
por: Cheng‐Chieh Hsu, et al.
Publicado: (2024)

Structural and morphological dynamics of “on‐path” and “off‐path” oligomers of human islet amyloid polypeptide
por: Daniel Warren, et al.
Publicado: (2026)

Self‐assembly of temperature‐responsive di‐block polypeptides functionalized with unnatural amino acids
por: Rotem Azulay, et al.
Publicado: (2024)

Experimental and computational analysis of the basis for accelerated amyloid formation by a disease linked mutant of human islet amyloid polypeptide
por: Lakshan Manathunga, et al.
Publicado: (2025)

Structural and dynamic roles of tandem acyl carrier proteins in aryl polyene biosynthesis in carbapenem‐resistant Acinetobacter baumannii
por: Chae Yeong Lee, et al.
Publicado: (2025)

Rheostatic contributions to protein stability can obscure a position's functional role
por: Pierce T. O'Neil, et al.
Publicado: (2024)

PackPPI: An integrated framework for protein–protein complex side‐chain packing and ΔΔG prediction based on diffusion model
por: Jingkai Zhang, et al.
Publicado: (2025)

PairK: Pairwise k‐mer alignment for quantifying protein motif conservation in disordered regions
por: Jackson C. Halpin, et al.
Publicado: (2024)

Dual‐wield NTPases : A novel protein family mined from AlphaFold DB
por: Koya Sakuma, et al.
Publicado: (2024)

Amino acid substitutions at rheostat positions in the Na + /taurocholate cotransporting polypeptide substrate channel have pleiotropic effects
por: Liskin Swint‐Kruse, et al.
Publicado: (2025)

AggNet: Advancing protein aggregation analysis through deep learning and protein language model
por: Wenjia He, et al.
Publicado: (2025)

AlphaFold‐driven discovery of oxysterol‐binding protein ‐ related protein‐phosphoinositide 3‐, 4‐, and 5‐phosphatase interactions using new generation confidence scores
por: Filippo Dall'Armellina, et al.
Publicado: (2026)

How hydrophobicity, side chains, and salt affect the dimensions of disordered proteins
por: Michael C. Baxa, et al.
Publicado: (2024)

The Phenix‐AlphaFold webservice: Enabling AlphaFold predictions for use in Phenix
por: Billy K. Poon, et al.
Publicado: (2024)

Classification of intramolecular side‐chain hydrogen bonds in coil fragments of globular proteins
por: Yasutaka Seki
Publicado: (2025)

A high‐sensitivity stopped‐flow EPR system to monitor millisecond conformational kinetics in spin‐labeled proteins
por: Alexander M. Garces, et al.
Publicado: (2025)

Intermediate heterogeneity modulates coupling between chain compaction and structure formation during protein folding
por: Anushka Kaushik, et al.
Publicado: (2026)

Exploring the sequence and structural determinants of the energy landscape from thermodynamically stable and kinetically trapped subtilisins: ISP1 and SbtE
por: Miriam R. Hood, et al.
Publicado: (2025)

Allosteric regulation of the tyrosine phosphatase PTP1B by a protein–protein interaction
por: Cassandra A. Chartier, et al.
Publicado: (2024)

Investigating the determinants of performance in machine learning for protein fitness prediction
por: Mahakaran Sandhu, et al.
Publicado: (2025)

At the core of the interaction: Probing charged side chains in flexible protein regions with simultaneous nuclear magnetic resonance experiments
por: Maria Anna Rodella, et al.
Publicado: (2026)

Calcium‐dependent cooperativity and stability of Titin's tandem I82 ‐ I83 domains
por: Colleen M. Kelly, et al.
Publicado: (2025)

Use of tandem‐affinity chromatography to incorporate nucleotide loading of small GTPases during their purification
por: Rofiat Oladimeji, et al.
Publicado: (2026)

Labile assembly of a tardigrade protein induces biostasis
por: S. Sanchez‐Martinez, et al.
Publicado: (2024)

In and out of the mitochondrial intermembrane space
por: Fara van der Schans, et al.
Publicado: (2026)

Assessing the validity of leucine zipper constructs predicted by AlphaFold
por: Isobel Mitic, et al.
Publicado: (2025)

A significance score for protein–protein interaction models through random docking
por: Katherine Maia McCoy, et al.
Publicado: (2024)

Long‐chain fatty acids block allergic reaction against lipid transfer protein Sola l 7 from tomato seeds
por: Jorge Parrón‐Ballesteros, et al.
Publicado: (2024)

Immobilization and enhancement of a heterodimeric fluorescence biosensor in fibrous protein biomaterials
por: Rebecca M. Booth, et al.
Publicado: (2025)

Glycopolymers stabilize protein folding and protein–protein interactions via enthalpic interactions
por: Sabrina M. Richter, et al.
Publicado: (2025)

Guiding AlphaFold predictions with experimental knowledge to inform dynamics and interactions with VAIRO
por: Josep Triviño, et al.
Publicado: (2026)

EFG‐CS: Predicting chemical shifts from amino acid sequences with protein structure prediction using machine learning and deep learning models
por: Xiaotong Gu, et al.
Publicado: (2024)

Correction to “Guiding AlphaFold predictions with experimental knowledge to inform dynamics and interactions with VAIRO ”
Publicado: (2026)

Applicability of AlphaFold2 in the modeling of dimeric, trimeric, and tetrameric coiled‐coil domains
por: Rafal Madaj, et al.
Publicado: (2024)

RrA, an enzyme from Rhodospirillum rubrum, is a prototype of a new family of short‐chain L‐asparaginases
por: Di Zhang, et al.
Publicado: (2024)

Efficient and economic protein labeling for NMR in mammalian expression systems: Application to a preT‐cell and T‐cell receptor protein
por: Robert J. Mallis, et al.
Publicado: (2024)

Protein– RNA condensation kinetics via filamentous nanoclusters
por: Ramon Peralta‐Martinez, et al.
Publicado: (2025)