Cover Image

Direct comparison of the structural dynamics between spontaneous and ligand‐induced folding of staphylococcal nuclease

Fuente: Wiley Open Access

Saved in:

Bibliographic Details
Main Authors:	Yujiro Mori, Takuya Mizukami, Issei Suzuki, Shingo Fukazawa, Kosuke Miki, Heinrich Roder, Kosuke Maki
Format:	Artículo Open Access
Published:	Wiley 2025
Subjects:	Protein Science
Online Access:	Acceder al recurso
Tags:	Add Tag No Tags, Be the first to tag this record!

Similar Items

The secreted staphylococcal biofilm protein Sbp forms biomolecular condensates in the presence of DNA
by: P. Ethan Adkins, et al.
Published: (2026)

Synonymous and non‐synonymous codon substitutions can alleviate dependence on GroEL for folding
by: Tali Haviv Reingewertz, et al.
Published: (2024)

Intermediate heterogeneity modulates coupling between chain compaction and structure formation during protein folding
by: Anushka Kaushik, et al.
Published: (2026)

Activity‐restoring mutations in the histamine H 3 receptor increase constitutive activity and reduce structural stability
by: Ami Nakajima, et al.
Published: (2025)

On the relationship between efficiency and cooperativity in multi‐subunit molecular machines
by: Miki Ben‐Maimon, et al.
Published: (2026)

Halogen bonds between ligands and proteins: Can we use them in validation?
by: Ida de Vries, et al.
Published: (2025)

The structural landscape of the immunoglobulin fold by large‐scale de novo design
by: Jorge Roel‐Touris, et al.
Published: (2024)

Correction to “The structural landscape of the immunoglobulin fold by large‐scale de novo design”
Published: (2025)

Docking guidance with experimental ligand structural density improves docking pose prediction and virtual screening performance
by: Althea T. Hansel‐Harris, et al.
Published: (2025)

SG‐ML‐PLAP: A structure‐guided machine learning–based scoring function for protein–ligand binding affinity prediction
by: Sapna Pal, et al.
Published: (2024)

Rational evolution for altering the ligand preference of estrogen receptor alpha
by: Roy Eerlings, et al.
Published: (2024)

MAGPIE: An interactive tool for visualizing and analyzing protein–ligand interactions
by: Daniel C. Pineda Rodriguez, et al.
Published: (2024)

Energy, water, and protein folding: A molecular dynamics‐based quantitative inventory of molecular interactions and forces that make proteins stable
by: Juan José Galano‐Frutos, et al.
Published: (2024)

On the same side: VISTA and its ligands interact in cis on the cell surface
by: Karina Smorodinsky‐Atias, et al.
Published: (2025)

Functional thermodynamics govern the ligand binding to human cytosolic transport proteins
by: Sebastian Michler, et al.
Published: (2026)

Unlocking GPCR–ligand interactions: Measuring binding affinities with thermal shift assay
by: Dmitrii Dashevskii, et al.
Published: (2025)

Binding free energy analysis of galectin‐3 natural ligands and synthetic inhibitors
by: Luke Newman, et al.
Published: (2025)

Predicting absolute protein folding stability using generative models
by: Matteo Cagiada, et al.
Published: (2024)

A comparison of antibody–antigen complex sequence‐to‐structure prediction methods and their systematic biases
by: Katherine Maia McCoy, et al.
Published: (2024)

Buttressing ligand‐binding pockets in de novo designed NTF2 ‐like domains
by: Marta Nadal, et al.
Published: (2025)

Mapping the energy landscape of a fold‐switching protein MAD2
by: Ander F. Pereira, et al.
Published: (2025)

PDB ‐ CAT : A user‐friendly tool to classify and analyze PDB protein–ligand complexes
by: Ariadna Llop‐Peiró, et al.
Published: (2025)

Structural and functional specialization of Bordetella pertussis DsbA for pertussis toxin folding
by: Stephanie Penning, et al.
Published: (2025)

Heterogeneous folding landscapes and predetermined breaking points within a protein family
by: Sebastian Pechmann
Published: (2024)

Glycopolymers stabilize protein folding and protein–protein interactions via enthalpic interactions
by: Sabrina M. Richter, et al.
Published: (2025)

Molecular mechanisms of chaperone‐directed protein folding: Insights from atomistic simulations
by: Matteo Castelli, et al.
Published: (2024)

Two‐conformer equilibrium of maltose‐binding protein in the absence of ligand from residual dipolar coupling analysis
by: Yang Shen, et al.
Published: (2025)

An engineered redox‐switchable streptavidin mutein enables the high‐affinity capture and efficient elution of biotinylated ligands
by: Jesse M. Marangoni, et al.
Published: (2025)

Concentration‐dependent mutational scanning probes the cellular folding landscape of α‐synuclein in yeast
by: Daeun Noh, et al.
Published: (2026)

Investigating operational stability and causes of cofactor release in fold type I amine transaminase
by: Xuebin Feng, et al.
Published: (2026)

Gating residues govern ligand unbinding kinetics from the buried cavity in HIF‐2α PAS‐B
by: Marion L. Silvestrini, et al.
Published: (2024)

Heat‐induced structural and chemical changes to a computationally designed miniprotein
by: Joshua A. Dudley, et al.
Published: (2024)

AlphaFold2's training set powers its predictions of some fold‐switched conformations
by: Joseph W. Schafer, et al.
Published: (2025)

Proline variants in the BRCA1 coiled‐coil domain disrupt folding and binding to PALB2
by: Chrissy N. S. Baker, et al.
Published: (2024)

Validation of de novo designed water‐soluble and transmembrane β‐barrels by in silico folding and melting
by: Alvaro Martin Hermosilla, et al.
Published: (2024)

The double histone fold: Structure, functional implications across the tree of life and relevance to protein design
by: Anna Ranaudo, et al.
Published: (2026)

Temperature induces a shift from insulin dihexamer to hexamer in collective dynamics
by: Esra Ayan
Published: (2025)

Revolutionizing structural biology: AI-driven protein structure prediction from AlphaFold to next-generation innovations.
by: Thangamalai, Mowna Sundari, et al.
Published: (2025)

Structural basis for uPAR binding to an antibody developed for targeted cancer therapy. Mechanistic insights into flexibility, ligand recognition, and molecular imaging
by: Rex F. Anane, et al.
Published: (2026)

Pseudophosphorylation of single residues of the J‐domain of DNAJA2 regulates the holding/folding balance of the Hsc70 system
by: Lorea Velasco‐Carneros, et al.
Published: (2024)