Compartment‐guided assembly of large‐scale molecular models with Bentopy
Fuente:
Wiley Open Access
Saved in:
| Main Authors: | M. S. S. Westendorp, J. A. Stevens, C. M. Brown, A. C. Dommer, T. A. Wassenaar, B. M. H. Bruininks, S. J. Marrink |
|---|---|
| Format: | Artículo Open Access |
| Published: |
Wiley
2026
|
| Subjects: | |
| Online Access: | |
| Tags: |
Add Tag
No Tags, Be the first to tag this record!
|
Similar Items
Mesoscale explorer: Visual exploration of large‐scale molecular models
by: Alexander Rose, et al.
Published: (2024)
by: Alexander Rose, et al.
Published: (2024)
Labile assembly of a tardigrade protein induces biostasis
by: S. Sanchez‐Martinez, et al.
Published: (2024)
by: S. Sanchez‐Martinez, et al.
Published: (2024)
An ALS ‐associated mutation in the C‐terminal α‐helix of TDP ‐43 uncouples condensate formation and amyloid assembly
by: Emily J. Byrd, et al.
Published: (2026)
by: Emily J. Byrd, et al.
Published: (2026)
Supervised learning of protein variant effects across large‐scale mutagenesis datasets
by: Thea K. Schulze, et al.
Published: (2026)
by: Thea K. Schulze, et al.
Published: (2026)
Resolving the structure and assembly of the honeybee silk heterotetrameric coiled coil
by: Caitlin L. Johnston, et al.
Published: (2025)
by: Caitlin L. Johnston, et al.
Published: (2025)
Interaction of Staphylococcus aureus di‐iron Repair of Iron Centers protein with the iron–sulfur cluster assembly SUF system
by: Frederico M. Lourenço, et al.
Published: (2025)
by: Frederico M. Lourenço, et al.
Published: (2025)
In silico peptide self‐assembly reveals the importance of N‐terminal motifs and the inhibition mechanism of the mutation L38M in α ‐synuclein fibrillation
by: Van T. T. Nguyen, et al.
Published: (2026)
by: Van T. T. Nguyen, et al.
Published: (2026)
Clustering protein functional families at large scale with hierarchical approaches
by: Nicola Bordin, et al.
Published: (2024)
by: Nicola Bordin, et al.
Published: (2024)
The structural landscape of the immunoglobulin fold by large‐scale de novo design
by: Jorge Roel‐Touris, et al.
Published: (2024)
by: Jorge Roel‐Touris, et al.
Published: (2024)
A large‐scale evolutionary and structural analysis of CLC channels and transporters
by: Ayush Mishra, et al.
Published: (2025)
by: Ayush Mishra, et al.
Published: (2025)
A multidomain hydrolase from the thermophile Thermanaeromonas toyohensis degrades high molecular mass forms of polyhydroxybutyrate
by: Stephen Quirk, et al.
Published: (2025)
by: Stephen Quirk, et al.
Published: (2025)
Correction to “The structural landscape of the immunoglobulin fold by large‐scale de novo design”
Published: (2025)
Published: (2025)
Exploration of the interaction between dynein intermediate chain and dynactin p150Glued reveals a novel binding Interface
by: A. J. Di Nicola, et al.
Published: (2025)
by: A. J. Di Nicola, et al.
Published: (2025)
Biophysical characterization of Cyclophilin B reveals membrane localization as its primary functional determinant as a prolyl isomerase
by: Sarah C. DeVoe, et al.
Published: (2026)
by: Sarah C. DeVoe, et al.
Published: (2026)
Enriching stabilizing mutations through automated analysis of molecular dynamics simulations using BoostMut
by: Kerlen T. Korbeld, et al.
Published: (2025)
by: Kerlen T. Korbeld, et al.
Published: (2025)
EFG‐CS: Predicting chemical shifts from amino acid sequences with protein structure prediction using machine learning and deep learning models
by: Xiaotong Gu, et al.
Published: (2024)
by: Xiaotong Gu, et al.
Published: (2024)
Engineering bio‐brick protein scaffolds for organizing enzyme assemblies
by: Alba Ledesma‐Fernandez, et al.
Published: (2024)
by: Alba Ledesma‐Fernandez, et al.
Published: (2024)
A large language model for predicting neurotoxic peptides and neurotoxins
by: Anand Singh Rathore, et al.
Published: (2025)
by: Anand Singh Rathore, et al.
Published: (2025)
Role of UDP‐N‐acetylmuramic acid in the regulation of MurA activity revealed by molecular dynamics simulations
by: Maycon Vinicius Damasceno de Oliveira, et al.
Published: (2024)
by: Maycon Vinicius Damasceno de Oliveira, et al.
Published: (2024)
MICOS and MIMAS , multifunctional assemblies linking mitochondrial biogenesis, architecture, and function
by: Patrick Horten, et al.
Published: (2026)
by: Patrick Horten, et al.
Published: (2026)
Correlating membrane‐protein dynamics with function: Integrating bioinformatics, molecular dynamics, and single‐molecule FRET
by: Hugh R. Higinbotham, et al.
Published: (2025)
by: Hugh R. Higinbotham, et al.
Published: (2025)
Tethered heme domains in a triheme cytochrome allow for increased electron transport distances
by: Benjamin W. Nash, et al.
Published: (2024)
by: Benjamin W. Nash, et al.
Published: (2024)
Structure‐guided engineering of protein stability through core hydrophobicity
by: Aravind Ravichandran, et al.
Published: (2025)
by: Aravind Ravichandran, et al.
Published: (2025)
Structural basis for uPAR binding to an antibody developed for targeted cancer therapy. Mechanistic insights into flexibility, ligand recognition, and molecular imaging
by: Rex F. Anane, et al.
Published: (2026)
by: Rex F. Anane, et al.
Published: (2026)
Controlled by disorder: Phosphorylation modulates SRSF1 domain availability for spliceosome assembly
by: Talia Fargason, et al.
Published: (2025)
by: Talia Fargason, et al.
Published: (2025)
Accurate affinity models for SH2 domains from peptide binding assays and free‐energy regression
by: Dejan Gagoski, et al.
Published: (2025)
by: Dejan Gagoski, et al.
Published: (2025)
Deamidation and isomerization to elusive isoaspartate in a computationally designed miniprotein
by: Katerina M. Blejec, et al.
Published: (2026)
by: Katerina M. Blejec, et al.
Published: (2026)
Biomolecular condensates—Prerequisites for anhydrobiosis?
by: Charles A. Elder, et al.
Published: (2025)
by: Charles A. Elder, et al.
Published: (2025)
Self‐assembly of temperature‐responsive di‐block polypeptides functionalized with unnatural amino acids
by: Rotem Azulay, et al.
Published: (2024)
by: Rotem Azulay, et al.
Published: (2024)
The many dimeric faces of Lys49 PLA 2 ‐like proteins: Conformational plasticity and membrane binding drive functional dimer states
by: Diane C. A. Lima, et al.
Published: (2026)
by: Diane C. A. Lima, et al.
Published: (2026)
A novel method for expressing and purifying large quantities of functional and stable human voltage‐gated proton channel (hHv1)
by: Emerson M. Carmona, et al.
Published: (2025)
by: Emerson M. Carmona, et al.
Published: (2025)
Unraveling ShuA detergent‐induced colloidal behavior in solution: A comprehensive SEC‐MALS, SAXS, and SANS study
by: A. Pozza, et al.
Published: (2025)
by: A. Pozza, et al.
Published: (2025)
Insights on the G protein‐coupled receptor helix 8 solution structure and orientation using a neurotensin receptor 1 peptide
by: James B. Bower, et al.
Published: (2024)
by: James B. Bower, et al.
Published: (2024)
Active site diversification of a non‐canonical amino acid decarboxylase by merging substrate multiplexed screening with computationally guided recombination
by: Allwin D. McDonald, et al.
Published: (2025)
by: Allwin D. McDonald, et al.
Published: (2025)
Novel insights into the assembly of the yeast translation initiation multifactor complex: The critical role of eIF5
by: Borja Sáez de la Fuente, et al.
Published: (2026)
by: Borja Sáez de la Fuente, et al.
Published: (2026)
Cis ‐ nonProline peptides: Genuine occurrences and their functional roles
by: Jane S. Richardson, et al.
Published: (2025)
by: Jane S. Richardson, et al.
Published: (2025)
AlphaFold modeling uncovers global structural features of class I and class II fungal hydrophobins
by: Li‐Yen Yang, et al.
Published: (2025)
by: Li‐Yen Yang, et al.
Published: (2025)
Ion mobility mass spectrometry unveils conformational effects of drug lead EPI ‐001 on the intrinsically disordered N ‐terminal domain of the androgen receptor
by: Ikhlas M. M. Ahmed, et al.
Published: (2024)
by: Ikhlas M. M. Ahmed, et al.
Published: (2024)
A pipeline for screening small molecule‐enhanced protein stability in a bacterial orphan receptor
by: James J. Siclari, et al.
Published: (2025)
by: James J. Siclari, et al.
Published: (2025)
Omega‐3 DHA as a blank canvas: A molecular approximation to how lipid mediators modulate LGR6 in inflammation resolution
by: Álex Pérez‐Sánchez, et al.
Published: (2026)
by: Álex Pérez‐Sánchez, et al.
Published: (2026)
Similar Items
-
Mesoscale explorer: Visual exploration of large‐scale molecular models
by: Alexander Rose, et al.
Published: (2024) -
Labile assembly of a tardigrade protein induces biostasis
by: S. Sanchez‐Martinez, et al.
Published: (2024) -
An ALS ‐associated mutation in the C‐terminal α‐helix of TDP ‐43 uncouples condensate formation and amyloid assembly
by: Emily J. Byrd, et al.
Published: (2026) -
Supervised learning of protein variant effects across large‐scale mutagenesis datasets
by: Thea K. Schulze, et al.
Published: (2026) -
Resolving the structure and assembly of the honeybee silk heterotetrameric coiled coil
by: Caitlin L. Johnston, et al.
Published: (2025)