Imagen de Portada

Modeling CAPRI Targets of Round 55 by Combining AlphaFold and Docking

Fuente: Wiley Open Access

Guardado en:

Detalles Bibliográficos
Autores principales:	Amar Singh, Matthew M. Copeland, Petras J. Kundrotas, Ilya A. Vakser
Formato:	Artículo Open Access
Publicado:	Wiley 2025
Materias:	Proteins: Structure, Function, and Bioinformatics
Acceso en línea:	Acceder al recurso
Etiquetas:	Agregar Etiqueta Sin Etiquetas, Sea el primero en etiquetar este registro!

Ejemplares similares

AlphaFold and Docking Approaches for Antibody–Antigen and Other Targets: Insights From CAPRI Rounds 47–55
por: Ragul Gowthaman, et al.
Publicado: (2025)

Protein Complex Structure Prediction With AlphaFold‐Enhanced HDOCK in CAPRI Rounds 47–55
por: Hao Li, et al.
Publicado: (2025)

Biomolecular Interaction Prediction in the Pre‐ and Post‐ AlphaFold Era: The 8th CAPRI Evaluation
por: Marc F. Lensink, et al.
Publicado: (2025)

Massive Sampling Strategy for Antibody–Antigen Targets in CAPRI Round 55 With MassiveFold
por: Nessim Raouraoua, et al.
Publicado: (2025)

Navigating the Pre‐ and Post‐ AlphaFold Divide: CAPRI 8th Evaluation Meeting, February 12–14, Grenoble, FR
por: Alexandre M. J. J. Bonvin, et al.
Publicado: (2025)

Improving AlphaFold2 ‐ and AlphaFold3 ‐Based Protein Complex Structure Prediction With MULTICOM4 in CASP16
por: Jian Liu, et al.
Publicado: (2025)

AlphaFold Kinase Optimizer: Enhancing Virtual Screening Performance Through Automated Refinement of AlphaFold ‐Based Kinase Structures
por: Sergei Evteev, et al.
Publicado: (2025)

Integrative Modeling in the Age of Machine Learning: A Summary of HADDOCK Strategies in CAPRI Rounds 47–55
por: Victor Reys, et al.
Publicado: (2024)

AlphaFold2 ‐Guided Cyclic Peptide Stabilizer Design to Target Protein–Protein Interactions
por: Niklas Halbwedl, et al.
Publicado: (2026)

Application of AlphaFold models in evaluating ligandable cysteines across E3 ligases
por: Patrick Koldenhof, et al.
Publicado: (2024)

Protein‐Variant‐Phenotype Study of NBAS Using AlphaFold in the Aspect of SOPH Syndrome
por: Leonid Zhozhikov, et al.
Publicado: (2024)

Assessing Structural Classification Using AlphaFold2 Models Through ECOD ‐Based Comparative Analysis
por: Takeshi Kawabata, et al.
Publicado: (2025)

Phosphorylation Mechanism Switching in Histidine Kinases Is a Tool for Fast Protein Evolution: Insights From AlphaFold Models
por: Federico A. Olivieri, et al.
Publicado: (2024)

AlphaFold2‐guided description ofCoBaHMA, a novel family of bacterial domains within the heavy‐metal‐associated superfamily
por: Geoffroy Gaschignard, et al.
Publicado: (2024)

Ligand Binding Prediction on Pharmaceutical and Nucleic Acid Targets by the CoDock Group in CASP16
por: Ren Kong, et al.
Publicado: (2025)

Large Extent of Convergent Evolution Towards the Double Histone Fold Revealed by Targeted Sequence and Structure Search Approach
por: Toshiko Miyake, et al.
Publicado: (2025)

Critical Assessment of Protein Intrinsic Disorder Round 3 ‐ Predicting Disorder in the Era of Protein Language Models
por: Mahta Mehdiabadi, et al.
Publicado: (2025)

Progress and Bottlenecks for Deep Learning in Computational Structure Biology: CASP Round XVI
por: Andriy Kryshtafovych, et al.
Publicado: (2025)

Impact of N‐Terminal Domain Conformation and Domain Interactions on RfaH Fold Switching
por: Bahman Seifi, et al.
Publicado: (2024)

Protein–Ligand Structure Prediction by Template‐Guided Ensemble Docking Strategy
por: Keqiong Zhang, et al.
Publicado: (2025)

Protein‐ RNA Docking Benchmark v3.0 Integrated With Binding Affinity
por: Shri Kant, et al.
Publicado: (2025)

DisDock : A Deep Learning Method for Metal Ion‐Protein Redocking
por: Menghan Lin, et al.
Publicado: (2025)

FTDMP: A Framework for Protein–Protein, Protein–DNA, and Protein–RNA Docking and Scoring
por: Kliment Olechnovič, et al.
Publicado: (2025)

The Crystal Structure of Human Transport and Golgi Organization 2 Homolog ( TANGO2 ) Protein Reveals an αββα‐Fold Arrangement
por: Anne Cooper, et al.
Publicado: (2025)

Role of the DPP4 Receptor in SARS ‐ CoV Entry: Insights From Docking and Molecular Dynamics Simulations
por: Patrícia Pereira Duzi Carvalho, et al.
Publicado: (2025)

Based on Molecular Docking, Molecular Dynamics Simulation and MM / PB ( GB ) SA to Study Potential Inhibitors of PRRSV ‐Nsp4
por: Tianyu Shi, et al.
Publicado: (2024)

Protein Target Highlights in CASP16 : Insights From the Structure Providers
por: Leila T. Alexander, et al.
Publicado: (2025)

Identifying Bioactive Conformation of GnRH1 Based on Molecular Docking of NMR Conformers to GnRH1R and mAbs
por: Madhavi Latha Yadav Bangaru, et al.
Publicado: (2026)

In Silico Structure‐Guided Design of Peptide Candidates Targeting γ‐Secretase Subunit Assembly
por: Selcen Arı Yuka, et al.
Publicado: (2026)

AbDPP: Target‐oriented antibody design with pretraining and prior biological structure knowledge
por: Chenglei Yu, et al.
Publicado: (2024)

Correction to “ AbDPP : Target‐Oriented Antibody Design With Pretraining and Prior Biological Structure Knowledge”
Publicado: (2024)

Application of artificial intelligence and machine learning techniques to the analysis of dynamic protein sequences
por: David C. Kombo, et al.
Publicado: (2024)

Cover Image, Volume 93, Issue 11
por: Pulkit Kr. Gupta, et al.
Publicado: (2025)

Structural Basis for M2 ‐2– MAVS Proteins Interaction in Human Metapneumovirus ( HMPV ): Exploring the Immune Evasion Mechanism Through Biomolecular Modeling, Structural Mutagenesis and Classical Simulations
por: Fahad M. Alshabrmi, et al.
Publicado: (2025)

The Mycobacterium tuberculosis Rv0132c Gene Product Mtb‐ FGD2 Can Act as an F 420 ‐Dependent Glucose Dehydrogenase
por: Adewale V. Aderemi, et al.
Publicado: (2026)

Structural Basis for the Essential Role of Ca2+ in the Lytic Activity of Staphylococcus aureus PlyGRCS Endolysin Targeting Methicillin‐Resistant Staphylococcus aureus
por: Gopinatha Krishnappa, et al.
Publicado: (2024)

Cover Image, Volume 94, Issue 4
por: Viswanathan Vijayan, et al.
Publicado: (2026)

Cover Image, Volume 94, Issue 3
por: Andriele S. Eichner, et al.
Publicado: (2026)

In Silico Analysis of Human NEK10 Reveals Novel Domain Architecture and Protein–Protein Interactions
por: Andriele S. Eichner, et al.
Publicado: (2025)

Results of the Protein Engineering Tournament: An Open Science Benchmark for Protein Modeling and Design
por: Chase Armer, et al.
Publicado: (2025)