cubar: a versatile package for codon usage bias analysis in R
Fuente:
Zenodo
Saved in:
| Main Authors: | Liu, Mengyue, Zi, Bu, Zhang, Hebin, Zhang, Hong |
|---|---|
| Format: | Recurso digital |
| Published: |
Zenodo
2024
|
| Online Access: | |
| Tags: |
Add Tag
No Tags, Be the first to tag this record!
|
Similar Items
Pepino mosaic virus: Recombination, spatiotemporal divergence and codon usage
by: Mei He, et al.
Published: (2024)
by: Mei He, et al.
Published: (2024)
Legacy Genomic codon usage Computational Demonstration and Data: Depreciated
by: Moore, Douglas Joseph Huntington
Published: (2026)
by: Moore, Douglas Joseph Huntington
Published: (2026)
Sequence decoding and analysis of the first reference mitogenome of globally threatened clown-knife fish, Chitala chitala: witness of codon usage bias and intense purifying selection.
by: Islam, Mohammad Nazrul, et al.
Published: (2026)
by: Islam, Mohammad Nazrul, et al.
Published: (2026)
Co-optimization of codon usage and mRNA secondary structure using quantum computing
by: Alevras, Dimitris, et al.
Published: (2025)
by: Alevras, Dimitris, et al.
Published: (2025)
Modeling and measuring how codon usage modulates the relationship between burden and yield during protein overexpression in bacteria
by: Roots, Cameron T., et al.
Published: (2025)
by: Roots, Cameron T., et al.
Published: (2025)
Translation of the downstream ORF from bicistronic mRNAs by human cells: Impact of codon usage and splicing in the upstream ORF
by: Philippe Paget‐Bailly, et al.
Published: (2025)
by: Philippe Paget‐Bailly, et al.
Published: (2025)
A strategy for successful dual‐species protein expression of genes with non‐optimal codon usage destined for bacterial and yeast cell factories
by: Marcus Wäneskog, et al.
Published: (2024)
by: Marcus Wäneskog, et al.
Published: (2024)
Codon usage bias of human papillomavirus type 33 and 58: A comprehensive analysis
by: Xiaochun Tan, et al.
Published: (2024)
by: Xiaochun Tan, et al.
Published: (2024)
JCVI: A versatile toolkit for comparative genomics analysis
by: Haibao Tang, et al.
Published: (2024)
by: Haibao Tang, et al.
Published: (2024)
tigeR: Tumor immunotherapy gene expression data analysis R package
by: Yihao Chen, et al.
Published: (2024)
by: Yihao Chen, et al.
Published: (2024)
GPUMD 4.0: A high‐performance molecular dynamics package for versatile materials simulations with machine‐learned potentials
by: Ke Xu, et al.
Published: (2025)
by: Ke Xu, et al.
Published: (2025)
A resource-efficient variational quantum algorithm for mRNA codon optimization
by: Zhang, Hongfeng, et al.
Published: (2024)
by: Zhang, Hongfeng, et al.
Published: (2024)
Characterization and structural analysis of a versatile aromatic prenyltransferase for imidazole-containing diketopiperazines.
by: Wang, Wenxue, et al.
Published: (2025)
by: Wang, Wenxue, et al.
Published: (2025)
Pre-trained protein language model for codon optimization
by: Pathak, Shashank, et al.
Published: (2024)
by: Pathak, Shashank, et al.
Published: (2024)
Meta-analysis with the glmmTMB R package
by: Williams, Coralie, et al.
Published: (2026)
by: Williams, Coralie, et al.
Published: (2026)
ASC analyzer: A Python package for measuring argument structure construction usage in English texts
by: Sung, Hakyung, et al.
Published: (2025)
by: Sung, Hakyung, et al.
Published: (2025)
Multifunctional tapered fiber-based micro-waveguide for optical ultrasound microsensors
by: Zhang, Mengyue, et al.
Published: (2025)
by: Zhang, Mengyue, et al.
Published: (2025)
Elucidating the role of ribosomal A1493 in stabilization and rigid support for the codon-anticodon helix from molecular dynamics simulations
by: Zhang, Shuhao, et al.
Published: (2025)
by: Zhang, Shuhao, et al.
Published: (2025)
Quantum versatility in PageRank
by: Zhang, Wei-Wei, et al.
Published: (2024)
by: Zhang, Wei-Wei, et al.
Published: (2024)
Evaluation of data inconsistency for multi-modal sentiment analysis
by: Wang, Yufei, et al.
Published: (2024)
by: Wang, Yufei, et al.
Published: (2024)
consexpressionR: an R package for consensus differential gene expression analysis
by: Costa-Silva, Juliana, et al.
Published: (2025)
by: Costa-Silva, Juliana, et al.
Published: (2025)
LCMS: An R package for automated semitargeted analysis in lipidomics
by: Caroline Peltier, et al.
Published: (2024)
by: Caroline Peltier, et al.
Published: (2024)
The Application Value of Transvaginal Three‐Dimensional Ultrasonography in the Diagnosis of Adenomyosis of the Uterus
by: Mengyu Li, et al.
Published: (2026)
by: Mengyu Li, et al.
Published: (2026)
‘MultiTraits': an integrated R package for analysis and visualization of multidimensional plant traits
by: Yan He, et al.
Published: (2026)
by: Yan He, et al.
Published: (2026)
A Chlorinated Indolium‐Based Nonlinear Optical Crystal Achieving Effective Terahertz‐Wave Generation and Highly Sensitive Detection
by: Hebin Liang, et al.
Published: (2024)
by: Hebin Liang, et al.
Published: (2024)
Key Decision-Makers in Multi-Agent Debates: Who Holds the Power?
by: Zhang, Qian, et al.
Published: (2025)
by: Zhang, Qian, et al.
Published: (2025)
Codon usage bias of secretory protein in Fusarium oxysporum f. sp. cubense tropical race 4
by: Hui Fang, et al.
Published: (2024)
by: Hui Fang, et al.
Published: (2024)
HDTSA: An R package for high-dimensional time series analysis
by: Chang, Jinyuan, et al.
Published: (2024)
by: Chang, Jinyuan, et al.
Published: (2024)
Bayesian multilevel compositional data analysis with the R package multilevelcoda
by: Le, Flora, et al.
Published: (2024)
by: Le, Flora, et al.
Published: (2024)
swaRmverse: An R package for the comparative analysis of collective motion
by: Marina Papadopoulou, et al.
Published: (2024)
by: Marina Papadopoulou, et al.
Published: (2024)
gsaot: an R package for Optimal Transport-based sensitivity analysis
by: Chiani, Leonardo, et al.
Published: (2025)
by: Chiani, Leonardo, et al.
Published: (2025)
NOA: a versatile, extensible tool for AI-based organoid analysis
by: Konov, Mikhail, et al.
Published: (2025)
by: Konov, Mikhail, et al.
Published: (2025)
Unexpected versatile electrical transport behaviors of ferromagnetic nickel films
by: Zhang, Kai-Xuan, et al.
Published: (2024)
by: Zhang, Kai-Xuan, et al.
Published: (2024)
Near-Optimal differentially private low-rank trace regression with guaranteed private initialization
by: Zha, Mengyue
Published: (2024)
by: Zha, Mengyue
Published: (2024)
Investigation of CaMV‐host co‐evolution through synonymous codon pattern
by: Mahin Pouresmaeil, et al.
Published: (2024)
by: Mahin Pouresmaeil, et al.
Published: (2024)
A versatile framework for attitude tuning of beamlines at advanced light sources
by: Li, Peng-Cheng, et al.
Published: (2024)
by: Li, Peng-Cheng, et al.
Published: (2024)
Unicity problem on meromorphic mappings of complete Kahler manifolds
by: Dong, Xianjing, et al.
Published: (2024)
by: Dong, Xianjing, et al.
Published: (2024)
The Web unpacked: a quantitative analysis of global Web usage
by: Xavier, Henrique S.
Published: (2024)
by: Xavier, Henrique S.
Published: (2024)
Juxtaposed concessive constructions: a usage-based functional analysis
by: Ivo da Costa do Rosário
Published: (2015)
by: Ivo da Costa do Rosário
Published: (2015)
Information alone doesn't change our water usage behaviors
by: Hong-Hoa Thi Nguyen
Published: (2025)
by: Hong-Hoa Thi Nguyen
Published: (2025)
Similar Items
-
Pepino mosaic virus: Recombination, spatiotemporal divergence and codon usage
by: Mei He, et al.
Published: (2024) -
Legacy Genomic codon usage Computational Demonstration and Data: Depreciated
by: Moore, Douglas Joseph Huntington
Published: (2026) -
Sequence decoding and analysis of the first reference mitogenome of globally threatened clown-knife fish, Chitala chitala: witness of codon usage bias and intense purifying selection.
by: Islam, Mohammad Nazrul, et al.
Published: (2026) -
Co-optimization of codon usage and mRNA secondary structure using quantum computing
by: Alevras, Dimitris, et al.
Published: (2025) -
Modeling and measuring how codon usage modulates the relationship between burden and yield during protein overexpression in bacteria
by: Roots, Cameron T., et al.
Published: (2025)