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2025
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| Online-Zugang: | https://doi.org/10.5281/zenodo.14853785 |
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| _version_ | 1866902088904081408 |
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| author | Liu, Zhiru |
| author_facet | Liu, Zhiru |
| contents | <p>Compact SNV catalogs of all the QP genomes used in the analysis of Liu & Good (PLOS Bio 2024; doi: 10.1371/journal.pbio.3002472)</p> <p>Originally generated in the analysis of Garud & Good et al (PLOS Bio 2019; doi: 10.1371/journal.pbio.3000102).</p> <p>Files includes:</p> <ul> <li>snvs_feather.tar.gz & snvs_parquet.tar.gz: Dataframes saved in either feather or parquet formats to optimize for space and speed.</li> <li>midas_db_data.tar.gz: reference genome sequences and genome features in the MIDAS database (doi:10.1101/gr.201863.115). Needed for annotating the SNV types (e.g. nonsense, missense, 4D site, etc.)</li> </ul> <p>Python helper functions for handling these catalogs can be found at https://github.com/zhiru-liu/LiuGood-2024-SNVs</p> |
| format | Recurso digital |
| id | zenodo_https___doi_org_10_5281_zenodo_14853785 |
| institution | Zenodo |
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| publishDate | 2025 |
| publisher | Zenodo |
| record_format | zenodo |
| spellingShingle | Dynamics of bacterial recombination in the human gut microbiome - SNV data Liu, Zhiru <p>Compact SNV catalogs of all the QP genomes used in the analysis of Liu & Good (PLOS Bio 2024; doi: 10.1371/journal.pbio.3002472)</p> <p>Originally generated in the analysis of Garud & Good et al (PLOS Bio 2019; doi: 10.1371/journal.pbio.3000102).</p> <p>Files includes:</p> <ul> <li>snvs_feather.tar.gz & snvs_parquet.tar.gz: Dataframes saved in either feather or parquet formats to optimize for space and speed.</li> <li>midas_db_data.tar.gz: reference genome sequences and genome features in the MIDAS database (doi:10.1101/gr.201863.115). Needed for annotating the SNV types (e.g. nonsense, missense, 4D site, etc.)</li> </ul> <p>Python helper functions for handling these catalogs can be found at https://github.com/zhiru-liu/LiuGood-2024-SNVs</p> |
| title | Dynamics of bacterial recombination in the human gut microbiome - SNV data |
| url | https://doi.org/10.5281/zenodo.14853785 |