Valsci - BMC Bioinformatics submission source code and supporting data

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Main Authors: Edelman, Brice, Skolnick, Jeffrey
Format: Recurso digital
Published: Zenodo 2025
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author Edelman, Brice
Skolnick, Jeffrey
author_facet Edelman, Brice
Skolnick, Jeffrey
contents <p><span>Valsci, an open-source, self-hostable utility that automates large-batch scientific claim verification using any OpenAI-compatible large language model (LLM). Valsci unites retrieval-augmented generation (RAG) with structured bibliometric scoring, enabling users to efficiently search, evaluate, and summarize evidence from the Semantic Scholar database and other academic sources. Unlike conventional standalone LLMs, which often suffer from hallucinations and unreliable citations, Valsci grounds its analyses in verifiable published findings. A guided prompt-flow approach is employed to generate query expansions, retrieve relevant excerpts, and synthesize coherent, evidence-based reports. Preliminary evaluations across claims from the SciFact benchmark dataset reveal that Valsci significantly outperforms base GPT-4o outputs in true/false annotation accuracy and citation hallucination rate. The system is highly scalable, processing hundreds of claims per hour through asynchronous parallelization. By providing an open and transparent platform for large-batch literature verification, Valsci substantially lowers the barrier to comprehensive evidence-based reviews and fosters a more reproducible research ecosystem.</span></p>
format Recurso digital
id zenodo_https___doi_org_10_5281_zenodo_14927291
institution Zenodo
language
publishDate 2025
publisher Zenodo
record_format zenodo
spellingShingle Valsci - BMC Bioinformatics submission source code and supporting data
Edelman, Brice
Skolnick, Jeffrey
bioinformatics
literature review
Review Literature as Topic
<p><span>Valsci, an open-source, self-hostable utility that automates large-batch scientific claim verification using any OpenAI-compatible large language model (LLM). Valsci unites retrieval-augmented generation (RAG) with structured bibliometric scoring, enabling users to efficiently search, evaluate, and summarize evidence from the Semantic Scholar database and other academic sources. Unlike conventional standalone LLMs, which often suffer from hallucinations and unreliable citations, Valsci grounds its analyses in verifiable published findings. A guided prompt-flow approach is employed to generate query expansions, retrieve relevant excerpts, and synthesize coherent, evidence-based reports. Preliminary evaluations across claims from the SciFact benchmark dataset reveal that Valsci significantly outperforms base GPT-4o outputs in true/false annotation accuracy and citation hallucination rate. The system is highly scalable, processing hundreds of claims per hour through asynchronous parallelization. By providing an open and transparent platform for large-batch literature verification, Valsci substantially lowers the barrier to comprehensive evidence-based reviews and fosters a more reproducible research ecosystem.</span></p>
title Valsci - BMC Bioinformatics submission source code and supporting data
topic bioinformatics
literature review
Review Literature as Topic
url https://doi.org/10.5281/zenodo.14927291