github.com/iwc-workflows/fastq-to-matrix-10x/scrna-seq-fastq-to-matrix-10x-v3
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| Format: | Recurso digital |
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Zenodo
2025
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| _version_ | 1866902303592677376 |
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| author | Lucille Lopez-Delisle Mehmet Tekman Hans-Rudolf Hotz Wendi Bacon Daniel Blankenberg |
| author_facet | Lucille Lopez-Delisle Mehmet Tekman Hans-Rudolf Hotz Wendi Bacon Daniel Blankenberg |
| contents | Complete preprocessing pipeline for 10X Genomics v3 single-cell RNA-seq data. Aligns raw FASTQ files using STARsolo, performs cell calling and quality filtering with DropletUtils, and formats outputs for seamless import into Seurat/Scanpy (Read10X function). |
| format | Recurso digital |
| id | zenodo_https___doi_org_10_5281_zenodo_14999800 |
| institution | Zenodo |
| language | |
| publishDate | 2025 |
| publisher | Zenodo |
| record_format | zenodo |
| spellingShingle | github.com/iwc-workflows/fastq-to-matrix-10x/scrna-seq-fastq-to-matrix-10x-v3 Lucille Lopez-Delisle Mehmet Tekman Hans-Rudolf Hotz Wendi Bacon Daniel Blankenberg Complete preprocessing pipeline for 10X Genomics v3 single-cell RNA-seq data. Aligns raw FASTQ files using STARsolo, performs cell calling and quality filtering with DropletUtils, and formats outputs for seamless import into Seurat/Scanpy (Read10X function). |
| title | github.com/iwc-workflows/fastq-to-matrix-10x/scrna-seq-fastq-to-matrix-10x-v3 |
| url | https://doi.org/10.5281/zenodo.14999800 |