| _version_ | 1866901657974996992 |
|---|---|
| author | Lucille Lopez-Delisle |
| author_facet | Lucille Lopez-Delisle |
| contents | This workflow takes as input SR BAM from ChIP-seq. It calls peaks on each replicate and intersect them. In parallel, each BAM is subsetted to smallest number of reads. Peaks are called using all subsets combined. Only peaks called using a combination of all subsets which have summits intersecting the intersection of at least x replicates will be kept. |
| format | Recurso digital |
| id | zenodo_https___doi_org_10_5281_zenodo_15078524 |
| institution | Zenodo |
| language | |
| publishDate | 2025 |
| publisher | Zenodo |
| record_format | zenodo |
| spellingShingle | github.com/iwc-workflows/consensus-peaks/consensus-peaks-chip-sr Lucille Lopez-Delisle This workflow takes as input SR BAM from ChIP-seq. It calls peaks on each replicate and intersect them. In parallel, each BAM is subsetted to smallest number of reads. Peaks are called using all subsets combined. Only peaks called using a combination of all subsets which have summits intersecting the intersection of at least x replicates will be kept. |
| title | github.com/iwc-workflows/consensus-peaks/consensus-peaks-chip-sr |
| url | https://doi.org/10.5281/zenodo.15078524 |