maurya-anand/nf-varcall: v1.0.0
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2025
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| _version_ | 1866902050352136192 |
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| author | Anand Maurya |
| author_facet | Anand Maurya |
| contents | <h1>Changelog</h1> <p>All notable changes to this project will be documented in this file.</p> <h2>[1.0.0] - 2024-11-24</h2> <h3>Added</h3> <ul> <li>Initial release of <code>nf-varcall</code>, a Nextflow-based pipeline for variant calling and annotation using PacBio Hi-Fi sequencing reads.</li> <li>Modules: <code>data_qc</code>, <code>pbmm2</code>, <code>deepvariant</code>, <code>filter_variants</code>, <code>merge_vcf</code>, <code>vep</code>, <code>alignment_summary</code>, <code>report</code>.</li> <li>Configuration: Support for Docker containers to ensure reproducibility.</li> <li><code>README.md</code> for usage instructions, input/output specifications, and configuration options.</li> <li><code>Makefile</code> to setup the VEP cache (<code>homo_sapiens_merged_vep_113_GRCh38</code>) and example data.</li> </ul> |
| format | Recurso digital |
| id | zenodo_https___doi_org_10_5281_zenodo_15082875 |
| institution | Zenodo |
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| publishDate | 2025 |
| publisher | Zenodo |
| record_format | zenodo |
| spellingShingle | maurya-anand/nf-varcall: v1.0.0 Anand Maurya <h1>Changelog</h1> <p>All notable changes to this project will be documented in this file.</p> <h2>[1.0.0] - 2024-11-24</h2> <h3>Added</h3> <ul> <li>Initial release of <code>nf-varcall</code>, a Nextflow-based pipeline for variant calling and annotation using PacBio Hi-Fi sequencing reads.</li> <li>Modules: <code>data_qc</code>, <code>pbmm2</code>, <code>deepvariant</code>, <code>filter_variants</code>, <code>merge_vcf</code>, <code>vep</code>, <code>alignment_summary</code>, <code>report</code>.</li> <li>Configuration: Support for Docker containers to ensure reproducibility.</li> <li><code>README.md</code> for usage instructions, input/output specifications, and configuration options.</li> <li><code>Makefile</code> to setup the VEP cache (<code>homo_sapiens_merged_vep_113_GRCh38</code>) and example data.</li> </ul> |
| title | maurya-anand/nf-varcall: v1.0.0 |
| url | https://doi.org/10.5281/zenodo.15082875 |