Copertina

TABLE 1 in Characterization of the Podospora anserina (Rabenh.) Niessl peroxidase gene family

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Autori principali:	Ferrari, Roselyne, Gautier, Valérie, Tangthirasunun, Narumon, Tong, Laetitia Chan Ho, Silar, Philippe
Natura:	Recurso digital
Pubblicazione:	Zenodo 2024
Soggetti:	Biodiversity Taxonomy
Accesso online:	Acceder al recurso
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_version_	1866902151183204352
author	Ferrari, Roselyne Gautier, Valérie Tangthirasunun, Narumon Tong, Laetitia Chan Ho Silar, Philippe
author_facet	Ferrari, Roselyne Gautier, Valérie Tangthirasunun, Narumon Tong, Laetitia Chan Ho Silar, Philippe
contents	<p class="zenodo-description-adequate-caption">TABLE 1. — Peroxidase genes in <i>P. anserina</i> (Rabenh.) Niessl genome. Symbols: <b>ND</b>, not determined;<b>?</b>, ambiguous answers from the prediction programs; expression level ranged from weak (<b>+/-</b>) to average (<b>++</b>) and strong (<b>++++</b>) when compared to other genes.</p><table><tbody><tr><th></th><th><b>Predicted</b></th><th></th><th></th><th></th><th></th><th></th><th></th></tr></tbody><tbody><tr><th></th><td><b>catalase/ In second.</b></td><td><b>Secretion</b></td><td><b>Secretion</b></td><td></td><td></td><td><b>Mutant name/</b></td></tr><tr><th><b>Gene</b></th><td><b>peroxidase</b></td><td><b>metab.</b></td><td><b>signal with</b></td><td><b>signal with</b></td><td><b>Expression</b></td><td><b>Other</b></td><td><b>Inactivation</b></td></tr><tr><th><b>number</b></th><td><b>domain</b></td><td><b>cluster?</b></td><td><b>SignalP</b></td><td><b>predisi</b></td><td><b>level</b></td><td><b>domain</b></td><td><b>marker</b></td></tr><tr><th><i>Pa_1_5970</i></th><td>Class II peroxidase</td><td>no</td><td>no</td><td>no</td><td>+/-</td><td>–</td><td>5970Δ/HygR</td></tr><tr><th><i>Pa_2_9370</i></th><td>Hybrid B peroxidase</td><td>no</td><td>yes</td><td>yes</td><td>++++</td><td>4 WSC</td><td>9370Δ/GenR</td></tr><tr><th><i>Pa_1_5120</i></th><td>Haloperoxidase</td><td>no</td><td>yes</td><td>yes</td><td>++</td><td>–</td><td>5120Δ/GenR</td></tr><tr><th><i>Pa_5_12205</i></th><td>Aromatic</td><td>no</td><td>no</td><td>no</td><td>+/-</td><td>–</td><td>12205Δ/NourR</td></tr><tr><th></th><td>peroxygenase</td><td></td><td></td><td></td><td></td><td></td><td></td></tr><tr><th><i>Pa_0_370</i></th><td>Aromatic</td><td>no</td><td>yes</td><td>yes</td><td>+++++</td><td>–</td><td>370Δ/HygR</td></tr><tr><th></th><td>peroxygenase</td><td></td><td></td><td></td><td></td><td></td><td></td></tr><tr><th><i>Pa_2_7390</i></th><td>Aromatic</td><td>yes</td><td>yes</td><td>yes</td><td>++</td><td>–</td><td>7390Δ/PhleoR</td></tr><tr><th></th><td>peroxygenase</td><td></td><td></td><td></td><td></td><td></td><td></td></tr><tr><th><i>Pa_2_6870</i></th><td>Aromatic</td><td>yes</td><td>no?</td><td>no?</td><td>++</td><td>–</td><td>6870Δ/GenR</td></tr><tr><th></th><td>peroxygenase</td><td></td><td></td><td></td><td></td><td></td><td></td></tr><tr><th><i>Pa_2_10</i></th><td>Aromatic</td><td>–</td><td>no</td><td>no</td><td>–</td><td>–</td><td>Naturally inactivated</td></tr><tr><th></th><td>peroxygenase</td><td></td><td></td><td></td><td></td><td></td><td>by a transposon</td></tr><tr><th></th><td>pseudogene</td><td></td><td></td><td></td><td></td><td></td><td>in strain S</td></tr><tr><th><i>Pa_2_8460</i></th><td>Glutathione</td><td>–</td><td>no</td><td>no</td><td>ND</td><td>–</td><td>Not inactivated</td></tr><tr><th></th><td>peroxidase</td><td></td><td></td><td></td><td></td><td></td><td>in the present</td></tr><tr><th><i>Pa_1_6960</i></th><td>Mitochondrial</td><td>–</td><td>no</td><td>no</td><td>ND</td><td>Mitochondrial study</td></tr><tr><th></th><td>cytochrome C</td><td></td><td></td><td></td><td></td><td>signal</td><td></td></tr><tr><th></th><td>peroxidase</td><td></td><td></td><td></td><td></td><td></td><td></td></tr><tr><th><i>Pa_2_390</i></th><td>Alkylhydroperoxidase</td><td>–</td><td>no</td><td>no</td><td>ND</td><td>–</td><td></td></tr><tr><th></th><td>D-like</td><td></td><td></td><td></td><td></td><td></td><td></td></tr></tbody></table>
format	Recurso digital
id	zenodo_https___doi_org_10_5281_zenodo_15155937
institution	Zenodo
language
publishDate	2024
publisher	Zenodo
record_format	zenodo
spellingShingle	TABLE 1 in Characterization of the Podospora anserina (Rabenh.) Niessl peroxidase gene family Ferrari, Roselyne Gautier, Valérie Tangthirasunun, Narumon Tong, Laetitia Chan Ho Silar, Philippe Biodiversity Taxonomy <p class="zenodo-description-adequate-caption">TABLE 1. — Peroxidase genes in <i>P. anserina</i> (Rabenh.) Niessl genome. Symbols: <b>ND</b>, not determined;<b>?</b>, ambiguous answers from the prediction programs; expression level ranged from weak (<b>+/-</b>) to average (<b>++</b>) and strong (<b>++++</b>) when compared to other genes.</p><table><tbody><tr><th></th><th><b>Predicted</b></th><th></th><th></th><th></th><th></th><th></th><th></th></tr></tbody><tbody><tr><th></th><td><b>catalase/ In second.</b></td><td><b>Secretion</b></td><td><b>Secretion</b></td><td></td><td></td><td><b>Mutant name/</b></td></tr><tr><th><b>Gene</b></th><td><b>peroxidase</b></td><td><b>metab.</b></td><td><b>signal with</b></td><td><b>signal with</b></td><td><b>Expression</b></td><td><b>Other</b></td><td><b>Inactivation</b></td></tr><tr><th><b>number</b></th><td><b>domain</b></td><td><b>cluster?</b></td><td><b>SignalP</b></td><td><b>predisi</b></td><td><b>level</b></td><td><b>domain</b></td><td><b>marker</b></td></tr><tr><th><i>Pa_1_5970</i></th><td>Class II peroxidase</td><td>no</td><td>no</td><td>no</td><td>+/-</td><td>–</td><td>5970Δ/HygR</td></tr><tr><th><i>Pa_2_9370</i></th><td>Hybrid B peroxidase</td><td>no</td><td>yes</td><td>yes</td><td>++++</td><td>4 WSC</td><td>9370Δ/GenR</td></tr><tr><th><i>Pa_1_5120</i></th><td>Haloperoxidase</td><td>no</td><td>yes</td><td>yes</td><td>++</td><td>–</td><td>5120Δ/GenR</td></tr><tr><th><i>Pa_5_12205</i></th><td>Aromatic</td><td>no</td><td>no</td><td>no</td><td>+/-</td><td>–</td><td>12205Δ/NourR</td></tr><tr><th></th><td>peroxygenase</td><td></td><td></td><td></td><td></td><td></td><td></td></tr><tr><th><i>Pa_0_370</i></th><td>Aromatic</td><td>no</td><td>yes</td><td>yes</td><td>+++++</td><td>–</td><td>370Δ/HygR</td></tr><tr><th></th><td>peroxygenase</td><td></td><td></td><td></td><td></td><td></td><td></td></tr><tr><th><i>Pa_2_7390</i></th><td>Aromatic</td><td>yes</td><td>yes</td><td>yes</td><td>++</td><td>–</td><td>7390Δ/PhleoR</td></tr><tr><th></th><td>peroxygenase</td><td></td><td></td><td></td><td></td><td></td><td></td></tr><tr><th><i>Pa_2_6870</i></th><td>Aromatic</td><td>yes</td><td>no?</td><td>no?</td><td>++</td><td>–</td><td>6870Δ/GenR</td></tr><tr><th></th><td>peroxygenase</td><td></td><td></td><td></td><td></td><td></td><td></td></tr><tr><th><i>Pa_2_10</i></th><td>Aromatic</td><td>–</td><td>no</td><td>no</td><td>–</td><td>–</td><td>Naturally inactivated</td></tr><tr><th></th><td>peroxygenase</td><td></td><td></td><td></td><td></td><td></td><td>by a transposon</td></tr><tr><th></th><td>pseudogene</td><td></td><td></td><td></td><td></td><td></td><td>in strain S</td></tr><tr><th><i>Pa_2_8460</i></th><td>Glutathione</td><td>–</td><td>no</td><td>no</td><td>ND</td><td>–</td><td>Not inactivated</td></tr><tr><th></th><td>peroxidase</td><td></td><td></td><td></td><td></td><td></td><td>in the present</td></tr><tr><th><i>Pa_1_6960</i></th><td>Mitochondrial</td><td>–</td><td>no</td><td>no</td><td>ND</td><td>Mitochondrial study</td></tr><tr><th></th><td>cytochrome C</td><td></td><td></td><td></td><td></td><td>signal</td><td></td></tr><tr><th></th><td>peroxidase</td><td></td><td></td><td></td><td></td><td></td><td></td></tr><tr><th><i>Pa_2_390</i></th><td>Alkylhydroperoxidase</td><td>–</td><td>no</td><td>no</td><td>ND</td><td>–</td><td></td></tr><tr><th></th><td>D-like</td><td></td><td></td><td></td><td></td><td></td><td></td></tr></tbody></table>
title	TABLE 1 in Characterization of the Podospora anserina (Rabenh.) Niessl peroxidase gene family
topic	Biodiversity Taxonomy
url	https://doi.org/10.5281/zenodo.15155937