Supplementary information for "Factors influencing the accuracy and precision in dating single gene trees"
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| Lenguaje: | inglés |
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2024
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| author | Louvel, Guillaume ROEST CROLLIUS, Hugues |
| author_facet | Louvel, Guillaume ROEST CROLLIUS, Hugues |
| contents | <p>Supplementary Figures, Tables, and Material and Methods for the main article “Factors influencing the accuracy and precision in dating single gene trees” (<a href="https://doi.org/10.1101/2020.08.24.264671">https://doi.org/10.1101/2020.08.24.264671v7</a>)</p> <h3>Table of contents</h3> <ol> <li>21 species Primate tree with median branch lengths (Figure).</li> <li>Complete list of the 56 input features for the regression (Table).</li> <li>Alternative regression to the one in the main text (Figure, Result).</li> <li>Enriched human gene annotations from the set with lowest predicted dispersion (Figure, Result).</li> <li>Enriched human gene annotations from the set of genes with longest alignment (Figure, Result).</li> <li>Observed distributions of the simulated parameters in the Primates gene trees (Figure)</li> <li>Sampling from the prior of the Beast model (Figure).</li> <li>Species and gene trees preprocessing (Methods).</li> <li>Program versions (Methods).</li> <li>Beast clock model parameters VS rate summary statistics (Figure).</li> <li>Feature transformations (Table, Methods).</li> <li>Aberrant gene trees (35), removed prior to the regression (Table, Methods).</li> <li>Detailed outputs and parameters of the regression of per-tree error (Table).</li> <li>Observed distribution of Kappa (transitions/transversions) in the Primates gene trees (Figure)</li> <li>Number of trees having one or more variable with ESS<200 (Table).</li> </ol> <p> </p> |
| format | Recurso digital |
| id | zenodo_https___doi_org_10_5281_zenodo_15203103 |
| institution | Zenodo |
| language | eng |
| publishDate | 2024 |
| publisher | Zenodo |
| record_format | zenodo |
| spellingShingle | Supplementary information for "Factors influencing the accuracy and precision in dating single gene trees" Louvel, Guillaume ROEST CROLLIUS, Hugues Genomics Genomics/methods Phylogeny <p>Supplementary Figures, Tables, and Material and Methods for the main article “Factors influencing the accuracy and precision in dating single gene trees” (<a href="https://doi.org/10.1101/2020.08.24.264671">https://doi.org/10.1101/2020.08.24.264671v7</a>)</p> <h3>Table of contents</h3> <ol> <li>21 species Primate tree with median branch lengths (Figure).</li> <li>Complete list of the 56 input features for the regression (Table).</li> <li>Alternative regression to the one in the main text (Figure, Result).</li> <li>Enriched human gene annotations from the set with lowest predicted dispersion (Figure, Result).</li> <li>Enriched human gene annotations from the set of genes with longest alignment (Figure, Result).</li> <li>Observed distributions of the simulated parameters in the Primates gene trees (Figure)</li> <li>Sampling from the prior of the Beast model (Figure).</li> <li>Species and gene trees preprocessing (Methods).</li> <li>Program versions (Methods).</li> <li>Beast clock model parameters VS rate summary statistics (Figure).</li> <li>Feature transformations (Table, Methods).</li> <li>Aberrant gene trees (35), removed prior to the regression (Table, Methods).</li> <li>Detailed outputs and parameters of the regression of per-tree error (Table).</li> <li>Observed distribution of Kappa (transitions/transversions) in the Primates gene trees (Figure)</li> <li>Number of trees having one or more variable with ESS<200 (Table).</li> </ol> <p> </p> |
| title | Supplementary information for "Factors influencing the accuracy and precision in dating single gene trees" |
| topic | Genomics Genomics/methods Phylogeny |
| url | https://doi.org/10.5281/zenodo.15203103 |