| _version_ | 1866902069938487296 |
|---|---|
| author | Feng, Song Rozum, Jordan C. Ufford, Hunter S. Kim, Doo Nam Im, Alexandria K. |
| author_facet | Feng, Song Rozum, Jordan C. Ufford, Hunter S. Kim, Doo Nam Im, Alexandria K. |
| contents | <p><strong>ProCaliper</strong> is an open-source Python library for functional and structural analysis, visualization, and annotation of proteomic data. ProCaliper enables interfacing with annotation resources such as <a href="https://www.uniprot.org/" rel="nofollow">UniProt</a>, <a href="https://www.phosphosite.org/" rel="nofollow">PhosphoSitePlus</a>, <a href="https://alphafold.ebi.ac.uk/" rel="nofollow">AlphaFold</a>, or user-supplied experimental data for computing structural and electromchemical property information, construction and analysis of residue-residue distance networks, and functional site identification at the residue or protein level.</p> <p> </p> <p><strong>Funding Acknowledgments</strong></p> <p>The software described here was funded by the Predictive Phenomics Science & Technology Initiative, conducted under the Laboratory Directed Research and Development Program, at Pacific Northwest National Laboratory (PNNL). PNNL is a multiprogram national laboratory operated by Battelle for the U.S. Department of Energy Office of Science under Contract No. DE-AC05-76RL01830.</p> |
| format | Recurso digital |
| id | zenodo_https___doi_org_10_5281_zenodo_15270417 |
| institution | Zenodo |
| language | eng |
| publishDate | 2025 |
| publisher | Zenodo |
| record_format | zenodo |
| spellingShingle | ProCaliper Feng, Song Rozum, Jordan C. Ufford, Hunter S. Kim, Doo Nam Im, Alexandria K. Phenomics Models, Structural Proteomics Computational Biology Protein Processing, Post-Translational <p><strong>ProCaliper</strong> is an open-source Python library for functional and structural analysis, visualization, and annotation of proteomic data. ProCaliper enables interfacing with annotation resources such as <a href="https://www.uniprot.org/" rel="nofollow">UniProt</a>, <a href="https://www.phosphosite.org/" rel="nofollow">PhosphoSitePlus</a>, <a href="https://alphafold.ebi.ac.uk/" rel="nofollow">AlphaFold</a>, or user-supplied experimental data for computing structural and electromchemical property information, construction and analysis of residue-residue distance networks, and functional site identification at the residue or protein level.</p> <p> </p> <p><strong>Funding Acknowledgments</strong></p> <p>The software described here was funded by the Predictive Phenomics Science & Technology Initiative, conducted under the Laboratory Directed Research and Development Program, at Pacific Northwest National Laboratory (PNNL). PNNL is a multiprogram national laboratory operated by Battelle for the U.S. Department of Energy Office of Science under Contract No. DE-AC05-76RL01830.</p> |
| title | ProCaliper |
| topic | Phenomics Models, Structural Proteomics Computational Biology Protein Processing, Post-Translational |
| url | https://doi.org/10.5281/zenodo.15270417 |