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2025
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| Online Access: | https://doi.org/10.5281/zenodo.15286548 |
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| _version_ | 1866902242418753536 |
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| author | Touzet, Hélène |
| author_facet | Touzet, Hélène |
| contents | <p>Supplementary data for "<em>PAMPA: a software for peptide markers and taxonomic identification for ZooMS samples in Archaeology and Paleontology</em>":</p> <ul> <li>Case study 1 (Classification of MALDI-TOF and MALDI FTICR modern spectra): Moderns </li> <li>Case study 2 (Analysis of 104 archaeological MALDI FTICR mass spectra): Caours</li> <li>Case study 3 (Taxonomic identification of sheep and goat datasets): Sheeps_and_Goats</li> <li>Case study 4 (Taxonomic identification of African bovids): African_bovids</li> <li>Case study 5 (Detection of mixtures): Mixtures</li> <li>Case study 6 (Identification of new peptide markers by homology): Marine_mammals</li> <li>Case study 7 (De novo full peptide generation and filtering): Sheep_Filtering</li> </ul> <p>Each folder contains the MS spectra (CSV format), peptide tables, PAMPA result files and occasionally additional files such as annotation and MASCOT files. All details are provided in supplementary_material.pdf.</p> <p>The PAMPA software is available at <a href="https://github.com/touzet/pampa">https://github.com/touzet/pampa</a>, and the COL1A1 and COL1A2 sequences are available at <a href="https://github.com/touzet/pampa_sequences">https://github.com/touzet/pampa_sequences</a>.</p> |
| format | Recurso digital |
| id | zenodo_https___doi_org_10_5281_zenodo_15286548 |
| institution | Zenodo |
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| publishDate | 2025 |
| publisher | Zenodo |
| record_format | zenodo |
| spellingShingle | Supplementary material for PAMPA (a software for peptide markers and taxonomic identification for ZooMS samples in Archaeology and Paleontology) Touzet, Hélène <p>Supplementary data for "<em>PAMPA: a software for peptide markers and taxonomic identification for ZooMS samples in Archaeology and Paleontology</em>":</p> <ul> <li>Case study 1 (Classification of MALDI-TOF and MALDI FTICR modern spectra): Moderns </li> <li>Case study 2 (Analysis of 104 archaeological MALDI FTICR mass spectra): Caours</li> <li>Case study 3 (Taxonomic identification of sheep and goat datasets): Sheeps_and_Goats</li> <li>Case study 4 (Taxonomic identification of African bovids): African_bovids</li> <li>Case study 5 (Detection of mixtures): Mixtures</li> <li>Case study 6 (Identification of new peptide markers by homology): Marine_mammals</li> <li>Case study 7 (De novo full peptide generation and filtering): Sheep_Filtering</li> </ul> <p>Each folder contains the MS spectra (CSV format), peptide tables, PAMPA result files and occasionally additional files such as annotation and MASCOT files. All details are provided in supplementary_material.pdf.</p> <p>The PAMPA software is available at <a href="https://github.com/touzet/pampa">https://github.com/touzet/pampa</a>, and the COL1A1 and COL1A2 sequences are available at <a href="https://github.com/touzet/pampa_sequences">https://github.com/touzet/pampa_sequences</a>.</p> |
| title | Supplementary material for PAMPA (a software for peptide markers and taxonomic identification for ZooMS samples in Archaeology and Paleontology) |
| url | https://doi.org/10.5281/zenodo.15286548 |