Supplementary Datasets for PhD thesis of Maximillian R. W. Jones
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| Format: | Recurso digital |
| Langue: | anglais |
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Zenodo
2025
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| _version_ | 1866901814544171008 |
|---|---|
| author | Jones, Maximillian |
| author_facet | Jones, Maximillian |
| contents | <h2>Chapter 2</h2> <p><strong>Supplementary Data 2.1</strong> – Matrix of shared <em>k</em>-mer state rates between all pairs of accessions</p> <p><strong>Supplementary Data 2.2</strong> – Loci for minimal SNP panel plus observed genotypes for 150 non-redundant accessions</p> <p><strong>Supplementary Data 2.3</strong> – Details of 183 selected metabolites</p> <p><strong>Supplementary Data 2.4</strong> – Scaffold from the Tsedey genome assembly by Cannarozzi et al. (2014) containing the A genome copy of the tef <em>TT2 </em>orthologue (Et_4A_032842).</p> <p><strong>Supplementary Data 2.5</strong> – Scaffold from the Tsedey genome assembly Cannarozzi et al. (2014) containing the B genome copy of the tef <em>TT2 </em>orthologue (Et_4B_039404)</p> <p><strong>Supplementary Data 2.6</strong> – Details of accessions used in the study</p> <p><strong>Supplementary Data 2.7</strong> – Original field trial design and updated field trial design based on definition of redundant accession groups</p> <p><strong>Supplementary Data 2.8</strong> – Raw field and grain phenotypic data</p> <p><strong>Supplementary Information 2</strong> – Contains Supp. Tables and Supp. Note 2.1 (additional Information on genotyping of the core collection with a minimal SNP set)</p> <p> </p> <h2>Chapter 3</h2> <p><strong>Supplementary Data 3.1 </strong>–<strong> </strong>Counts and TPMs for all IWGSC RefSeq v1.1 genes in semi-spatial spike RNA-seq samples</p> <p><strong>Supplementary Data 3.2 </strong>– Information on primers used in this chapter</p> <p><strong>Supplementary Data 3.3 </strong>– Gel electrophoresis analyses of additional MJ_GG24 cDNA samples</p> <p><strong>Supplementary Data 3.4 </strong>– Numbers of significant interactions from stepwise linear models of floral organ size parameters</p> <p><strong>Supplementary Data 3.5</strong> – DESeq2 differential expression results for basal and central spike section comparisons</p> <p><strong>Supplementary Data 3.6</strong> – L0 parts and L2 constructs used in this chapter</p> <p><strong>Supplementary Data 3.7</strong> – Detailed methodology for MOF/mof1 organ size image processing using ImageJ/FIJI</p> <p><strong>Supplementary Data 3.8</strong> – MJ_GG18 phenotyping</p> <p><strong>Supplementary Data 3.9</strong> – MJ_GG19 phenotyping</p> <p><strong>Supplementary Data 3.10</strong> – MOF/mof1 gross phenotyping</p> <p><strong>Supplementary Data 3.11</strong> – Raw MOF/mof1 organ size data</p> <p><strong>Supplementary Data 3.12</strong> – Raw MOF/mof1 floral organ images</p> <p> </p> <h2>Chapter 4</h2> <p><strong>Supplementary Information 4</strong> – contains Supp. Note 4.1 (tagmentation protocol)</p> |
| format | Recurso digital |
| id | zenodo_https___doi_org_10_5281_zenodo_15296805 |
| institution | Zenodo |
| language | eng |
| publishDate | 2025 |
| publisher | Zenodo |
| record_format | zenodo |
| spellingShingle | Supplementary Datasets for PhD thesis of Maximillian R. W. Jones Jones, Maximillian <h2>Chapter 2</h2> <p><strong>Supplementary Data 2.1</strong> – Matrix of shared <em>k</em>-mer state rates between all pairs of accessions</p> <p><strong>Supplementary Data 2.2</strong> – Loci for minimal SNP panel plus observed genotypes for 150 non-redundant accessions</p> <p><strong>Supplementary Data 2.3</strong> – Details of 183 selected metabolites</p> <p><strong>Supplementary Data 2.4</strong> – Scaffold from the Tsedey genome assembly by Cannarozzi et al. (2014) containing the A genome copy of the tef <em>TT2 </em>orthologue (Et_4A_032842).</p> <p><strong>Supplementary Data 2.5</strong> – Scaffold from the Tsedey genome assembly Cannarozzi et al. (2014) containing the B genome copy of the tef <em>TT2 </em>orthologue (Et_4B_039404)</p> <p><strong>Supplementary Data 2.6</strong> – Details of accessions used in the study</p> <p><strong>Supplementary Data 2.7</strong> – Original field trial design and updated field trial design based on definition of redundant accession groups</p> <p><strong>Supplementary Data 2.8</strong> – Raw field and grain phenotypic data</p> <p><strong>Supplementary Information 2</strong> – Contains Supp. Tables and Supp. Note 2.1 (additional Information on genotyping of the core collection with a minimal SNP set)</p> <p> </p> <h2>Chapter 3</h2> <p><strong>Supplementary Data 3.1 </strong>–<strong> </strong>Counts and TPMs for all IWGSC RefSeq v1.1 genes in semi-spatial spike RNA-seq samples</p> <p><strong>Supplementary Data 3.2 </strong>– Information on primers used in this chapter</p> <p><strong>Supplementary Data 3.3 </strong>– Gel electrophoresis analyses of additional MJ_GG24 cDNA samples</p> <p><strong>Supplementary Data 3.4 </strong>– Numbers of significant interactions from stepwise linear models of floral organ size parameters</p> <p><strong>Supplementary Data 3.5</strong> – DESeq2 differential expression results for basal and central spike section comparisons</p> <p><strong>Supplementary Data 3.6</strong> – L0 parts and L2 constructs used in this chapter</p> <p><strong>Supplementary Data 3.7</strong> – Detailed methodology for MOF/mof1 organ size image processing using ImageJ/FIJI</p> <p><strong>Supplementary Data 3.8</strong> – MJ_GG18 phenotyping</p> <p><strong>Supplementary Data 3.9</strong> – MJ_GG19 phenotyping</p> <p><strong>Supplementary Data 3.10</strong> – MOF/mof1 gross phenotyping</p> <p><strong>Supplementary Data 3.11</strong> – Raw MOF/mof1 organ size data</p> <p><strong>Supplementary Data 3.12</strong> – Raw MOF/mof1 floral organ images</p> <p> </p> <h2>Chapter 4</h2> <p><strong>Supplementary Information 4</strong> – contains Supp. Note 4.1 (tagmentation protocol)</p> |
| title | Supplementary Datasets for PhD thesis of Maximillian R. W. Jones |
| url | https://doi.org/10.5281/zenodo.15296805 |