Data from "Fine-scale movement data reveal primarily surface foraging and nocturnal flight activity in the endangered Bermuda petrel"
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2025
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| author | Becciu, Paolo Patterson, Allison Gjerdrum, Carina Madeiros, Jeremy Campioni, Letizia |
| author_facet | Becciu, Paolo Patterson, Allison Gjerdrum, Carina Madeiros, Jeremy Campioni, Letizia |
| contents | <p>This archive includes data files associated with the paper "Fine-scale movement data reveal primarily surface foraging and nocturnal flight activity in the endangered Bermuda petrel" currently under review in <em>Ecology and Evolution.</em></p> <p>These data are from tracking Bermuda Petrels (BEPE) at Nonsuch Island during the incubation period in 2023 During the 2023 field season, there were 25 deployments of biologgers on BEPE, of which 18 deployments were successful. Three logger types were used that recorded GPS, TDR, accelerometer (ACC), and/or magnetometer (MAG) data: Axy5 (Technosmart - TDR, ACC, MAG), AxyTrek (Technomsart - GPS, TDR, MAG), and Nano Fix-GEO (PathTrack - GPS). </p> <p>The file "BEPE_2023_deployments.csv" contains metadata about each deployment. Each deployment has a unique identifier (dep_id) based off of the tag id, bird id and start date. The file "BEPE_acc_behaviour_classified.csv" includes the accelerometer derived metrics and behavioural classifications described in the paper. The "raw_data" folder contains files for each individual deployment named after the dep_id field. Biologging data have been trimmed to only include data collected while devices were on birds. All datetime data have been standardized to UTC. Data fields have been standardized across the three device types used. Each biologging file includes columns for all four data types recorded (GPS, TDR, ACC, MAG) to facilitate combining data across logger types for analysis.</p> <p>####################<br># BEPE_2023_deployments.csv<br># This file contains metadata about each logger deployments, data fields are defined below<br>####################<br>species: text<br>colony: text, colony identity<br>dep_lon: numeric, longitude of deployment in decimal degrees<br>dep_lat:numeric, latitude of deployment in decimal degrees<br>bird_id: text, alphanumeric band code for bird identity<br>tag_type: text, model of device deployed<br>device_id: text, alphanumeric code for device identity<br>dep_id: text, unique alphanumeric code for deployment derived from device_id + bird_id + time_released<br>period: text, breeding stage<br>year: integer, year of deployment<br>nest: text, nest identity<br>sex: text, sex of bird, male or female<br>time_released: datetime, start time of deployment, YYYY-mm-dd HH:MM UTC<br>time_activated: datetime, start time of device, YYYY-mm-dd HH:MM UTC<br>time_recaptured: datetime, end time of deployment, YYYY-mm-dd HH:MM UTC<br>mass_on: numeric, bird mass at start of deployment in grams <br>tarsus: numeric, length of tarsus in mm<br>gps: Y/N, indicates device included gps<br>tdr: Y/N, indicates device included temperature depth recorder<br>acc: Y/N, indicates device included accelerometer<br>mag: Y/N, indicates device included magnetometer</p> <p>####################<br># BEPE_acc_behaviour_classified.csv<br># This file contains behavioural classifications with the derived accelerometer metrics. Data fields are defined below.<br>####################<br>bird_id: text, alphanumeric band code for bird identity<br>time_min: datetime, YYYY-mm-dd HH:MM UTC <br>temperature_c: numeric, temperature in degrees celsius<br>z_mean: numeric, mean heave acceleration, gravity<br>z_q10: numeric, 10th quantile of heave acceleration, gravity<br>z_q90: numeric, 90th quantile of heave acceleration, gravity <br>z_iqr: numeric, inter-quartile range of heave acceleration, gravity <br>y_mean: numeric, mean sway acceleration, gravity<br>y_q10: numeric, 10th quantile of sway acceleration, gravity <br>y_q90: numeric, 90th quantile of sway acceleration, gravity <br>y_iqr: numeric, inter-quartile range of sway acceleration, gravity<br>x_mean: numeric, mean surge acceleration, gravity<br>x_q10: numeric, 10th quantile of surge acceleration, gravity<br>x_q90: numeric, 90th quantile of surge acceleration, gravity<br>x_iqr: numeric, inter-quartile range of surge acceleration, gravity<br>peak_sum: numeric, sum of wing beats, count <br>vesba_mean: numeric, mean VeSBA acceleration, gravity <br>vesba_q10: numeric, 10th quantile VeSBA acceleration, gravity <br>vesba_q90: numeric, 90th quantile VeSBA acceleration, gravity <br>vesba_iqr: numeric, inter-quartile range VeSBA acceleration, gravity <br>vedba_mean: numeric, mean VeDBA acceleration, gravity <br>vedba_q10: numeric, 10th quantile VeDBA acceleration, gravity <br>vedba_q90: numeric, 90th quantile VeDBA acceleration, gravity <br>vedba_iqr: numeric, inter-quartile range VeDBA acceleration, gravity <br>pitch_iqr: numeric, inter-quartile range pitch, degrees <br>roll_iqr: numeric, inter-quartile range roll, degrees <br>dx_mean: numeric, mean dynamic heave acceleration, gravity <br>dx_q10: numeric, 10th quantile dynamic heave acceleration, gravity<br>dx_q90: numeric, 90th quantile dynamic heave acceleration, gravity<br>dx_iqr: numeric, inter-quartile range dynamic heave acceleration, gravity<br>dy_mean: numeric, mean dynamic sway acceleration, gravity <br>dy_q10: numeric, 10th quantile dynamic sway acceleration, gravity<br>dy_q90: numeric, 90th quantile dynamic sway acceleration, gravity<br>dy_iqr: numeric, inter-quartile range dynamic sway acceleration, gravity<br>dz_mean: numeric, mean dynamic surge acceleration, gravity <br>dz_q10: numeric, 10th quantile dynamic surge acceleration, gravity<br>dz_q90: numeric, 90th quantile dynamic surge acceleration, gravity<br>dz_iqr: numeric, inter-quartile range dynamic surge acceleration, gravity <br>in_trip: boolean, 1 = in foraging trip, 0 = at colony <br>behaviour: factor, classified behaviour ("Burrow - stirring", "Burrow - still", "Burrow - active", "Flying - flap-glide", "Flying - intensive", "Flying - dynamic soaring", "Water - intensive", "Water - active", "Water - inactive")</p> <p>####################<br># raw_data<br># This folder contains data files associated with each deployment, data fields are defined below<br>####################<br>time: timestamp, YYYY-mm-dd HH:MM:OS UTC<br>lon: numeric, GPS longitude in decimal degrees<br>lat: numeric, GPS latitude in decimal degrees<br>altitude_m: numeric, GPS altitude measured by GPS in meters<br>satellites: integer, GPS number of satellites contributing to GPS location<br>hdop: numeric, GPS horizontal dilution of precision<br>temperature_c: numeric, TDR temperature in degrees celsius<br>pressure_mb: numeric, TDR pressure in millibars<br>depth_m: numeric, TDR depth in meters<br>wet: boolean, 1 = wet, 0 = dry<br>x: numeric, acceleration in the x-axis (surge) in units of gravity <br>y: numeric, acceleration in the y-axis (sway) in units of gravity <br>z: numeric, acceleration in the z-axis (heave) in units of gravity <br>magx: numeric, magnetic field in the x-axis (surge) in units of gauss<br>magy: numeric, magnetic field in the y-axis (sway) in units of gauss<br>magz: numeric, magnetic field in the z-axis (heave) in units of gauss<br>battery_v: device battery level in volts<br>bird_id: text, alphanumeric band code for bird identity<br>dep_id: text, unique alphanumeric code for deployment derived from device_id + bird_id + time_released<br>deployed: 0/1 indicates which rows were recorded while the device was on the bird, undeployed data shold be excluded from analysis but includes magnetometer calibrations done prior to deployments</p> |
| format | Recurso digital |
| id | zenodo_https___doi_org_10_5281_zenodo_15364504 |
| institution | Zenodo |
| language | |
| publishDate | 2025 |
| publisher | Zenodo |
| record_format | zenodo |
| spellingShingle | Data from "Fine-scale movement data reveal primarily surface foraging and nocturnal flight activity in the endangered Bermuda petrel" Becciu, Paolo Patterson, Allison Gjerdrum, Carina Madeiros, Jeremy Campioni, Letizia <p>This archive includes data files associated with the paper "Fine-scale movement data reveal primarily surface foraging and nocturnal flight activity in the endangered Bermuda petrel" currently under review in <em>Ecology and Evolution.</em></p> <p>These data are from tracking Bermuda Petrels (BEPE) at Nonsuch Island during the incubation period in 2023 During the 2023 field season, there were 25 deployments of biologgers on BEPE, of which 18 deployments were successful. Three logger types were used that recorded GPS, TDR, accelerometer (ACC), and/or magnetometer (MAG) data: Axy5 (Technosmart - TDR, ACC, MAG), AxyTrek (Technomsart - GPS, TDR, MAG), and Nano Fix-GEO (PathTrack - GPS). </p> <p>The file "BEPE_2023_deployments.csv" contains metadata about each deployment. Each deployment has a unique identifier (dep_id) based off of the tag id, bird id and start date. The file "BEPE_acc_behaviour_classified.csv" includes the accelerometer derived metrics and behavioural classifications described in the paper. The "raw_data" folder contains files for each individual deployment named after the dep_id field. Biologging data have been trimmed to only include data collected while devices were on birds. All datetime data have been standardized to UTC. Data fields have been standardized across the three device types used. Each biologging file includes columns for all four data types recorded (GPS, TDR, ACC, MAG) to facilitate combining data across logger types for analysis.</p> <p>####################<br># BEPE_2023_deployments.csv<br># This file contains metadata about each logger deployments, data fields are defined below<br>####################<br>species: text<br>colony: text, colony identity<br>dep_lon: numeric, longitude of deployment in decimal degrees<br>dep_lat:numeric, latitude of deployment in decimal degrees<br>bird_id: text, alphanumeric band code for bird identity<br>tag_type: text, model of device deployed<br>device_id: text, alphanumeric code for device identity<br>dep_id: text, unique alphanumeric code for deployment derived from device_id + bird_id + time_released<br>period: text, breeding stage<br>year: integer, year of deployment<br>nest: text, nest identity<br>sex: text, sex of bird, male or female<br>time_released: datetime, start time of deployment, YYYY-mm-dd HH:MM UTC<br>time_activated: datetime, start time of device, YYYY-mm-dd HH:MM UTC<br>time_recaptured: datetime, end time of deployment, YYYY-mm-dd HH:MM UTC<br>mass_on: numeric, bird mass at start of deployment in grams <br>tarsus: numeric, length of tarsus in mm<br>gps: Y/N, indicates device included gps<br>tdr: Y/N, indicates device included temperature depth recorder<br>acc: Y/N, indicates device included accelerometer<br>mag: Y/N, indicates device included magnetometer</p> <p>####################<br># BEPE_acc_behaviour_classified.csv<br># This file contains behavioural classifications with the derived accelerometer metrics. Data fields are defined below.<br>####################<br>bird_id: text, alphanumeric band code for bird identity<br>time_min: datetime, YYYY-mm-dd HH:MM UTC <br>temperature_c: numeric, temperature in degrees celsius<br>z_mean: numeric, mean heave acceleration, gravity<br>z_q10: numeric, 10th quantile of heave acceleration, gravity<br>z_q90: numeric, 90th quantile of heave acceleration, gravity <br>z_iqr: numeric, inter-quartile range of heave acceleration, gravity <br>y_mean: numeric, mean sway acceleration, gravity<br>y_q10: numeric, 10th quantile of sway acceleration, gravity <br>y_q90: numeric, 90th quantile of sway acceleration, gravity <br>y_iqr: numeric, inter-quartile range of sway acceleration, gravity<br>x_mean: numeric, mean surge acceleration, gravity<br>x_q10: numeric, 10th quantile of surge acceleration, gravity<br>x_q90: numeric, 90th quantile of surge acceleration, gravity<br>x_iqr: numeric, inter-quartile range of surge acceleration, gravity<br>peak_sum: numeric, sum of wing beats, count <br>vesba_mean: numeric, mean VeSBA acceleration, gravity <br>vesba_q10: numeric, 10th quantile VeSBA acceleration, gravity <br>vesba_q90: numeric, 90th quantile VeSBA acceleration, gravity <br>vesba_iqr: numeric, inter-quartile range VeSBA acceleration, gravity <br>vedba_mean: numeric, mean VeDBA acceleration, gravity <br>vedba_q10: numeric, 10th quantile VeDBA acceleration, gravity <br>vedba_q90: numeric, 90th quantile VeDBA acceleration, gravity <br>vedba_iqr: numeric, inter-quartile range VeDBA acceleration, gravity <br>pitch_iqr: numeric, inter-quartile range pitch, degrees <br>roll_iqr: numeric, inter-quartile range roll, degrees <br>dx_mean: numeric, mean dynamic heave acceleration, gravity <br>dx_q10: numeric, 10th quantile dynamic heave acceleration, gravity<br>dx_q90: numeric, 90th quantile dynamic heave acceleration, gravity<br>dx_iqr: numeric, inter-quartile range dynamic heave acceleration, gravity<br>dy_mean: numeric, mean dynamic sway acceleration, gravity <br>dy_q10: numeric, 10th quantile dynamic sway acceleration, gravity<br>dy_q90: numeric, 90th quantile dynamic sway acceleration, gravity<br>dy_iqr: numeric, inter-quartile range dynamic sway acceleration, gravity<br>dz_mean: numeric, mean dynamic surge acceleration, gravity <br>dz_q10: numeric, 10th quantile dynamic surge acceleration, gravity<br>dz_q90: numeric, 90th quantile dynamic surge acceleration, gravity<br>dz_iqr: numeric, inter-quartile range dynamic surge acceleration, gravity <br>in_trip: boolean, 1 = in foraging trip, 0 = at colony <br>behaviour: factor, classified behaviour ("Burrow - stirring", "Burrow - still", "Burrow - active", "Flying - flap-glide", "Flying - intensive", "Flying - dynamic soaring", "Water - intensive", "Water - active", "Water - inactive")</p> <p>####################<br># raw_data<br># This folder contains data files associated with each deployment, data fields are defined below<br>####################<br>time: timestamp, YYYY-mm-dd HH:MM:OS UTC<br>lon: numeric, GPS longitude in decimal degrees<br>lat: numeric, GPS latitude in decimal degrees<br>altitude_m: numeric, GPS altitude measured by GPS in meters<br>satellites: integer, GPS number of satellites contributing to GPS location<br>hdop: numeric, GPS horizontal dilution of precision<br>temperature_c: numeric, TDR temperature in degrees celsius<br>pressure_mb: numeric, TDR pressure in millibars<br>depth_m: numeric, TDR depth in meters<br>wet: boolean, 1 = wet, 0 = dry<br>x: numeric, acceleration in the x-axis (surge) in units of gravity <br>y: numeric, acceleration in the y-axis (sway) in units of gravity <br>z: numeric, acceleration in the z-axis (heave) in units of gravity <br>magx: numeric, magnetic field in the x-axis (surge) in units of gauss<br>magy: numeric, magnetic field in the y-axis (sway) in units of gauss<br>magz: numeric, magnetic field in the z-axis (heave) in units of gauss<br>battery_v: device battery level in volts<br>bird_id: text, alphanumeric band code for bird identity<br>dep_id: text, unique alphanumeric code for deployment derived from device_id + bird_id + time_released<br>deployed: 0/1 indicates which rows were recorded while the device was on the bird, undeployed data shold be excluded from analysis but includes magnetometer calibrations done prior to deployments</p> |
| title | Data from "Fine-scale movement data reveal primarily surface foraging and nocturnal flight activity in the endangered Bermuda petrel" |
| url | https://doi.org/10.5281/zenodo.15364504 |