Mechanistic basis for GPCR phosphorylation-dependent allosteric signaling specificity of β-arrestin 1 and 2

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Main Authors: Madhu, Midhun, MURARKA, RAJESH
Format: Recurso digital
Published: Zenodo 2025
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author Madhu, Midhun
MURARKA, RAJESH
author_facet Madhu, Midhun
MURARKA, RAJESH
contents <p>This repository contains all essential input files, simulation data, and scripts used in the study. It includes molecular dynamics (MD) simulation files such as the initial coordinates of the systems, topology and parameter files, and MD input files. For dimensionality reduction, the repository provides input files used to reduce the high-dimensional simulation data. In the machine learning classification section, it contains the training and validation datasets, input features used for classification, and scripts for model construction and performance evaluation. Additionally, the repository includes node feature data and scripts for constructing and evaluating the graph neural network (GNN) autoencoder model.</p>
format Recurso digital
id zenodo_https___doi_org_10_5281_zenodo_15428803
institution Zenodo
language
publishDate 2025
publisher Zenodo
record_format zenodo
spellingShingle Mechanistic basis for GPCR phosphorylation-dependent allosteric signaling specificity of β-arrestin 1 and 2
Madhu, Midhun
MURARKA, RAJESH
GPCR
arrestin
Molecular Dynamics
Machine Learning
<p>This repository contains all essential input files, simulation data, and scripts used in the study. It includes molecular dynamics (MD) simulation files such as the initial coordinates of the systems, topology and parameter files, and MD input files. For dimensionality reduction, the repository provides input files used to reduce the high-dimensional simulation data. In the machine learning classification section, it contains the training and validation datasets, input features used for classification, and scripts for model construction and performance evaluation. Additionally, the repository includes node feature data and scripts for constructing and evaluating the graph neural network (GNN) autoencoder model.</p>
title Mechanistic basis for GPCR phosphorylation-dependent allosteric signaling specificity of β-arrestin 1 and 2
topic GPCR
arrestin
Molecular Dynamics
Machine Learning
url https://doi.org/10.5281/zenodo.15428803