github.com/broadinstitute/long-read-pipelines/PBCCS
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| Natura: | Recurso digital |
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Zenodo
2025
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| _version_ | 1866902304245940224 |
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| author | broadinstitute |
| author_facet | broadinstitute |
| contents | <p><a href="https://shields.io/"></a> </p> <h1>Long read pipelines</h1> <p>This repository contains pipelines for processing of long read data from PacBio and/or Oxford Nanopore platforms. The pipelines are written in <a href="https://github.com/openwdl/wdl/blob/main/versions/1.0/SPEC.md#introduction">WDL 1.0</a> intended for use with Google Cloud Platform via the scientific workflow engine, <a href="https://github.com/broadinstitute/cromwell">Cromwell</a>. Processing is designed to be reasonably consistent between both long read platforms, and use platform-specific options or tasks where necessary.</p> <p>High level workflows can be found in the wdl/ directory.</p> <p><strong>Documentation</strong>: Documentation for each workflow can be found at the repository <a href="https://broadinstitute.github.io/long-read-pipelines/">site</a>.</p> <p><strong>External Contributors</strong>: Please see the <a href="https://broadinstitute.github.io/long-read-pipelines/development_guide/#contributing-guidelines">Contributing Guidelines</a> for information on how to contribute to the repository.</p> |
| format | Recurso digital |
| id | zenodo_https___doi_org_10_5281_zenodo_15538007 |
| institution | Zenodo |
| language | |
| publishDate | 2025 |
| publisher | Zenodo |
| record_format | zenodo |
| spellingShingle | github.com/broadinstitute/long-read-pipelines/PBCCS broadinstitute <p><a href="https://shields.io/"></a> </p> <h1>Long read pipelines</h1> <p>This repository contains pipelines for processing of long read data from PacBio and/or Oxford Nanopore platforms. The pipelines are written in <a href="https://github.com/openwdl/wdl/blob/main/versions/1.0/SPEC.md#introduction">WDL 1.0</a> intended for use with Google Cloud Platform via the scientific workflow engine, <a href="https://github.com/broadinstitute/cromwell">Cromwell</a>. Processing is designed to be reasonably consistent between both long read platforms, and use platform-specific options or tasks where necessary.</p> <p>High level workflows can be found in the wdl/ directory.</p> <p><strong>Documentation</strong>: Documentation for each workflow can be found at the repository <a href="https://broadinstitute.github.io/long-read-pipelines/">site</a>.</p> <p><strong>External Contributors</strong>: Please see the <a href="https://broadinstitute.github.io/long-read-pipelines/development_guide/#contributing-guidelines">Contributing Guidelines</a> for information on how to contribute to the repository.</p> |
| title | github.com/broadinstitute/long-read-pipelines/PBCCS |
| url | https://doi.org/10.5281/zenodo.15538007 |