github.com/broadinstitute/long-read-pipelines/BenchmarkVCFs

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Main Author: broadinstitute
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Published: Zenodo 2025
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_version_ 1866902237427531776
author broadinstitute
author_facet broadinstitute
contents <p>A workflow to calculate sensitivity and precision of a germline variant calling pipeline by comparing a 'call' vcf produced by the pipeline to a gold standard 'truth' vcf. Allows for stratification based on interval lists, bed files, or variant types defined according to GATK SelectVariants.</p>
format Recurso digital
id zenodo_https___doi_org_10_5281_zenodo_15538062
institution Zenodo
language
publishDate 2025
publisher Zenodo
record_format zenodo
spellingShingle github.com/broadinstitute/long-read-pipelines/BenchmarkVCFs
broadinstitute
<p>A workflow to calculate sensitivity and precision of a germline variant calling pipeline by comparing a 'call' vcf produced by the pipeline to a gold standard 'truth' vcf. Allows for stratification based on interval lists, bed files, or variant types defined according to GATK SelectVariants.</p>
title github.com/broadinstitute/long-read-pipelines/BenchmarkVCFs
url https://doi.org/10.5281/zenodo.15538062