Ebola Outbreak Meta-Analysis Data and Code
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| Autori principali: | , , |
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| Natura: | Recurso digital |
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2025
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| _version_ | 1866902259433996288 |
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| author | Paasi, George Okware, Sam Olupot-Olupot, Peter |
| author_facet | Paasi, George Okware, Sam Olupot-Olupot, Peter |
| contents | <p>This release of the "Ebola Outbreak Meta-Analysis" repository, containing all data, code, and documentation needed to reproduce the analyses in Paasi et al. (2025):</p> <ul> <li><strong>Data</strong>:<ul> <li><code>data/data_extraction_with_guide.csv</code> (template and guide)</li> <li><code>data/data_extraction_example.csv</code> (example extraction for Gulu 2000)</li> </ul> </li> <li><strong>Code</strong>:<ul> <li><code>code/meta_analysis.R</code> (meta-analysis and meta-regression scripts)</li> <li><code>code/session_info.R</code> (R session information for reproducibility)</li> </ul> </li> <li><strong>Figures</strong> (will be generated by running <code>meta_analysis.R</code>):<ul> <li><code>figures/forest_plot_cfr.png</code></li> <li><code>figures/bubble_plot_delay_vs_cfr.png</code></li> <li><code>figures/bubble_plot_onset_to_response.png</code></li> </ul> </li> <li><strong>Supplementary</strong>:<ul> <li><code>supplementary/PRISMA_checklist_filled.pdf</code> (completed PRISMA 2020 checklist)</li> <li><code>supplementary/excluded_studies_list.csv</code> (list of full-text exclusions with reasons)</li> <li><code>supplementary/PRISMA_flow_diagram.png</code> (flowchart of screening process)</li> </ul> </li> <li><strong>Documentation</strong>:<ul> <li><code>README.md</code> (overview, instructions, and folder structure)</li> <li><code>CITATION.cff</code> (how to cite this repository)</li> <li><code>requirements.txt</code> (R package dependencies)</li> <li><code>LICENSE</code> (CC BY 4.0)</li> </ul> </li> </ul> <p>To reproduce the paper's results:</p> <ol> <li>Install R ≥ 4.3.2 and the packages listed in <code>requirements.txt</code>.</li> <li>Populate <code>data/data_extraction_with_guide.csv</code> with outbreak data.</li> <li>Run <code>code/meta_analysis.R</code> to generate pooled CFR estimates, meta-regression outputs, and figures.</li> <li>See <code>code/session_info.R</code> for the exact R session details.</li> </ol> <p>This release is linked to a Zenodo DOI: https://doi.org</p> |
| format | Recurso digital |
| id | zenodo_https___doi_org_10_5281_zenodo_15564078 |
| institution | Zenodo |
| language | |
| publishDate | 2025 |
| publisher | Zenodo |
| record_format | zenodo |
| spellingShingle | Ebola Outbreak Meta-Analysis Data and Code Paasi, George Okware, Sam Olupot-Olupot, Peter <p>This release of the "Ebola Outbreak Meta-Analysis" repository, containing all data, code, and documentation needed to reproduce the analyses in Paasi et al. (2025):</p> <ul> <li><strong>Data</strong>:<ul> <li><code>data/data_extraction_with_guide.csv</code> (template and guide)</li> <li><code>data/data_extraction_example.csv</code> (example extraction for Gulu 2000)</li> </ul> </li> <li><strong>Code</strong>:<ul> <li><code>code/meta_analysis.R</code> (meta-analysis and meta-regression scripts)</li> <li><code>code/session_info.R</code> (R session information for reproducibility)</li> </ul> </li> <li><strong>Figures</strong> (will be generated by running <code>meta_analysis.R</code>):<ul> <li><code>figures/forest_plot_cfr.png</code></li> <li><code>figures/bubble_plot_delay_vs_cfr.png</code></li> <li><code>figures/bubble_plot_onset_to_response.png</code></li> </ul> </li> <li><strong>Supplementary</strong>:<ul> <li><code>supplementary/PRISMA_checklist_filled.pdf</code> (completed PRISMA 2020 checklist)</li> <li><code>supplementary/excluded_studies_list.csv</code> (list of full-text exclusions with reasons)</li> <li><code>supplementary/PRISMA_flow_diagram.png</code> (flowchart of screening process)</li> </ul> </li> <li><strong>Documentation</strong>:<ul> <li><code>README.md</code> (overview, instructions, and folder structure)</li> <li><code>CITATION.cff</code> (how to cite this repository)</li> <li><code>requirements.txt</code> (R package dependencies)</li> <li><code>LICENSE</code> (CC BY 4.0)</li> </ul> </li> </ul> <p>To reproduce the paper's results:</p> <ol> <li>Install R ≥ 4.3.2 and the packages listed in <code>requirements.txt</code>.</li> <li>Populate <code>data/data_extraction_with_guide.csv</code> with outbreak data.</li> <li>Run <code>code/meta_analysis.R</code> to generate pooled CFR estimates, meta-regression outputs, and figures.</li> <li>See <code>code/session_info.R</code> for the exact R session details.</li> </ol> <p>This release is linked to a Zenodo DOI: https://doi.org</p> |
| title | Ebola Outbreak Meta-Analysis Data and Code |
| url | https://doi.org/10.5281/zenodo.15564078 |