github.com/PRIMED-Ancestry-Inference/PCA_projection/projected_PCA
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2025
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| _version_ | 1866902082298052608 |
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| author | PRIMED-Ancestry-Inference |
| author_facet | PRIMED-Ancestry-Inference |
| contents | <p>This workflow is used to project a genetic test dataset (in VCF format) into PCA space using user-defined allele loadings. First, the allele loadings (from the create_pca_projection workflow) and the test dataset are both subset to contain the same set of variants (Note: this workflow assumes that variants from both the loadings and test dataset have been previously harmonized such that variants follow the same naming convention, alleles at each site are ordered identically, and variants are sorted). Then the test dataset is projected onto the principal components.</p> |
| format | Recurso digital |
| id | zenodo_https___doi_org_10_5281_zenodo_15578881 |
| institution | Zenodo |
| language | |
| publishDate | 2025 |
| publisher | Zenodo |
| record_format | zenodo |
| spellingShingle | github.com/PRIMED-Ancestry-Inference/PCA_projection/projected_PCA PRIMED-Ancestry-Inference <p>This workflow is used to project a genetic test dataset (in VCF format) into PCA space using user-defined allele loadings. First, the allele loadings (from the create_pca_projection workflow) and the test dataset are both subset to contain the same set of variants (Note: this workflow assumes that variants from both the loadings and test dataset have been previously harmonized such that variants follow the same naming convention, alleles at each site are ordered identically, and variants are sorted). Then the test dataset is projected onto the principal components.</p> |
| title | github.com/PRIMED-Ancestry-Inference/PCA_projection/projected_PCA |
| url | https://doi.org/10.5281/zenodo.15578881 |