Python-based PyMOL and ChimeraX plugins for deriving distance restrains from AlphaFold structure predictions.
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| Autores principales: | , |
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| Formato: | Recurso digital |
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Zenodo
2025
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| _version_ | 1866902286989524992 |
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| author | Stathopulos, Peter B. Lin, Qi-Tong |
| author_facet | Stathopulos, Peter B. Lin, Qi-Tong |
| contents | <p>The PyMOL plugin "PML_AF_generate.py" requires Python 3.</p> <p><span lang="EN-US">USAGE:</span></p> <p><strong><span lang="EN-US">atom_distances selection1, selection2, [cutoff (default=4)],</span><span lang="EN-US">[contact_name (default=contacts)], [b_factor_cutoff (default=80)], </span><span lang="EN-US">[output_file (default=contacts.csv)]</span></strong></p> <p>The ChimerX plugin "CX_AF_generate.py" requires Python 3.</p> <p><span lang="EN-US">USAGE:</span></p> <p><strong><span lang="EN-US">atom_distances cutoff <distance> bfactor_cutoff <pLDDT> atom_name1 <atom> atom_name2 <atom></span></strong></p> |
| format | Recurso digital |
| id | zenodo_https___doi_org_10_5281_zenodo_15609023 |
| institution | Zenodo |
| language | |
| publishDate | 2025 |
| publisher | Zenodo |
| record_format | zenodo |
| spellingShingle | Python-based PyMOL and ChimeraX plugins for deriving distance restrains from AlphaFold structure predictions. Stathopulos, Peter B. Lin, Qi-Tong <p>The PyMOL plugin "PML_AF_generate.py" requires Python 3.</p> <p><span lang="EN-US">USAGE:</span></p> <p><strong><span lang="EN-US">atom_distances selection1, selection2, [cutoff (default=4)],</span><span lang="EN-US">[contact_name (default=contacts)], [b_factor_cutoff (default=80)], </span><span lang="EN-US">[output_file (default=contacts.csv)]</span></strong></p> <p>The ChimerX plugin "CX_AF_generate.py" requires Python 3.</p> <p><span lang="EN-US">USAGE:</span></p> <p><strong><span lang="EN-US">atom_distances cutoff <distance> bfactor_cutoff <pLDDT> atom_name1 <atom> atom_name2 <atom></span></strong></p> |
| title | Python-based PyMOL and ChimeraX plugins for deriving distance restrains from AlphaFold structure predictions. |
| url | https://doi.org/10.5281/zenodo.15609023 |