Supporting data for: Uncovering evolutionarily remote and highly potent antimicrobial peptides with protein language models
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2025
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| _version_ | 1866902330610286592 |
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| author | Yu, Qinze Liu, Hongbin |
| author_facet | Yu, Qinze Liu, Hongbin |
| contents | <p><a href="https://zenodo.org/api/records/15622525/draft/files/training_data.zip/content" target="_blank" rel="noopener noreferrer">training_data.zip</a>: 5985 AMPs and 5985 non-AMPs sequences for HMD-AMP model training</p> <p><a href="https://zenodo.org/api/records/15622525/draft/files/swineGutORFs.faa.gz/content" target="_blank" rel="noopener noreferrer">swineGutORFs.faa.gz</a>: 584,645,352 small peptides predicted from swine gut microbial genomes</p> <p><a href="https://zenodo.org/api/records/15622525/draft/files/swineHost_815.faa/content" target="_blank" rel="noopener noreferrer">swineHost_815.faa</a>: 815 small peptides sourced from swine genome</p> <p><a href="https://zenodo.org/api/records/15622525/draft/files/8mammalian.faa.gz/content" target="_blank" rel="noopener noreferrer">8mammalian.faa.gz</a>: 175,536,631 small peptides predicted from gut microbial genomes collected from 8 mammalian hosts (Mus musculus, Bos taurus, Hydropotes inermis, Capreolus pygargus, Equus caballus, Papio cynocephalus, Diceros bicornis, Homo sapiens (Hadza Hunter-Gatherers)). The peptide sequences from Diceros bicornis and Homo sapiens were named as seq_id_MicrobialGenomeID (e.g. peptide seq_0000029_humanG_100 from human and peptide seq_0000001_DbGenome_100 from Diceros bicornis). The peptide sequences from other six mammalian hosts were named as MicrobialGenomeID.seq_id (e.g. animal_1000.c_1_1 from Mus musculus).</p> <p><a href="https://zenodo.org/api/records/15622525/draft/files/MammalianGenomesID.txt/content" target="_blank" rel="noopener noreferrer">MammalianGenomesID.txt</a>: the mammalian host sources of each MicrobialGenomeID.</p> |
| format | Recurso digital |
| id | zenodo_https___doi_org_10_5281_zenodo_15622525 |
| institution | Zenodo |
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| publishDate | 2025 |
| publisher | Zenodo |
| record_format | zenodo |
| spellingShingle | Supporting data for: Uncovering evolutionarily remote and highly potent antimicrobial peptides with protein language models Yu, Qinze Liu, Hongbin <p><a href="https://zenodo.org/api/records/15622525/draft/files/training_data.zip/content" target="_blank" rel="noopener noreferrer">training_data.zip</a>: 5985 AMPs and 5985 non-AMPs sequences for HMD-AMP model training</p> <p><a href="https://zenodo.org/api/records/15622525/draft/files/swineGutORFs.faa.gz/content" target="_blank" rel="noopener noreferrer">swineGutORFs.faa.gz</a>: 584,645,352 small peptides predicted from swine gut microbial genomes</p> <p><a href="https://zenodo.org/api/records/15622525/draft/files/swineHost_815.faa/content" target="_blank" rel="noopener noreferrer">swineHost_815.faa</a>: 815 small peptides sourced from swine genome</p> <p><a href="https://zenodo.org/api/records/15622525/draft/files/8mammalian.faa.gz/content" target="_blank" rel="noopener noreferrer">8mammalian.faa.gz</a>: 175,536,631 small peptides predicted from gut microbial genomes collected from 8 mammalian hosts (Mus musculus, Bos taurus, Hydropotes inermis, Capreolus pygargus, Equus caballus, Papio cynocephalus, Diceros bicornis, Homo sapiens (Hadza Hunter-Gatherers)). The peptide sequences from Diceros bicornis and Homo sapiens were named as seq_id_MicrobialGenomeID (e.g. peptide seq_0000029_humanG_100 from human and peptide seq_0000001_DbGenome_100 from Diceros bicornis). The peptide sequences from other six mammalian hosts were named as MicrobialGenomeID.seq_id (e.g. animal_1000.c_1_1 from Mus musculus).</p> <p><a href="https://zenodo.org/api/records/15622525/draft/files/MammalianGenomesID.txt/content" target="_blank" rel="noopener noreferrer">MammalianGenomesID.txt</a>: the mammalian host sources of each MicrobialGenomeID.</p> |
| title | Supporting data for: Uncovering evolutionarily remote and highly potent antimicrobial peptides with protein language models |
| url | https://doi.org/10.5281/zenodo.15622525 |