| _version_ | 1866902107233189888 |
|---|---|
| author | Heather Ward |
| author_facet | Heather Ward |
| contents | <h2>MSSNG DB6 VQSR</h2> <p>Perform VQSR on the <code>GVCFtyper_main</code> files - they will be combined into a single file, VQSR performed, and then re-split by chromosome. All chromosome <code>GVCFtyper_main</code> files should be input here, and one <code>GVCFtyper_main.recal</code> recalibrated main file per chromosome will be output. Also input the <code>chr__.bed</code> region files from the previous step.</p> <h4>Running Sentieon</h4> <p>In order to use Sentieon, you must possess a license, distributed as either a key, a server, or a gcp project. The license may be attained by contacting Sentieon, and must be passed as an input to this workflow.</p> |
| format | Recurso digital |
| id | zenodo_https___doi_org_10_5281_zenodo_15650463 |
| institution | Zenodo |
| language | |
| publishDate | 2019 |
| publisher | Zenodo |
| record_format | zenodo |
| spellingShingle | github.com/DNAstack/mssng-db6-vqsr Heather Ward db6 dnastack mssng sentieon <h2>MSSNG DB6 VQSR</h2> <p>Perform VQSR on the <code>GVCFtyper_main</code> files - they will be combined into a single file, VQSR performed, and then re-split by chromosome. All chromosome <code>GVCFtyper_main</code> files should be input here, and one <code>GVCFtyper_main.recal</code> recalibrated main file per chromosome will be output. Also input the <code>chr__.bed</code> region files from the previous step.</p> <h4>Running Sentieon</h4> <p>In order to use Sentieon, you must possess a license, distributed as either a key, a server, or a gcp project. The license may be attained by contacting Sentieon, and must be passed as an input to this workflow.</p> |
| title | github.com/DNAstack/mssng-db6-vqsr |
| topic | db6 dnastack mssng sentieon |
| url | https://doi.org/10.5281/zenodo.15650463 |