GonzalezLab/epigenetic-effects-transposons-dmelanogaster: Scripts and data for the "The epigenetics effects of transposable elements are genomic context dependent and not restricted to gene silencing"
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2025
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| _version_ | 1866902056237793280 |
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| author | Marta Coronado-Zamora |
| author_facet | Marta Coronado-Zamora |
| contents | <h1>The epigenetics effects of transposable elements are not restricted to gene silencing</h1> <p>Scripts and data for the manuscript "The epigenetics effects of transposable elements are not restricted to gene silencing".</p> <h2>Directories and files</h2> <ul> <li><strong>TEs with epigenetic effects data</strong>: contains table for the 2,235 polymorphic TEs analyzed</li> <li><strong>Epigenetic effects</strong>: ad-hoc bash scripts to analyze the epigenetic effects of TEs</li> <li><strong>Expression analyses</strong>: ad-hoc bash and R scripts to compute the z-score comparing gene expression between alleles with and without the TE insertion</li> <li><strong>Obtain breakpoints</strong>: scripts to obtain the breakpoint coordinate for TEs absent from genomes</li> <li><strong>Null distribution</strong>: script to select random regions of the genome that matches the location of TE insertions</li> <li><strong>ANALYSES_EPIGENETICS.Rmd</strong>: R Markdown documents with the code used for doing analyses and creating figures</li> </ul> <h2>Citation</h2> <p>Coronado-Zamora & González (2025) The epigenetics effects of transposable elements are not restricted to gene silencing. Genome Biology.</p> <h2>Contact</h2> <p>Project: <a href="https://github.com/GonzalezLab/epigenetic-effects-transposons-dmelanogaster/">https://github.com/GonzalezLab/epigenetic-effects-transposons-dmelanogaster/</a></p> |
| format | Recurso digital |
| id | zenodo_https___doi_org_10_5281_zenodo_15876977 |
| institution | Zenodo |
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| publishDate | 2025 |
| publisher | Zenodo |
| record_format | zenodo |
| spellingShingle | GonzalezLab/epigenetic-effects-transposons-dmelanogaster: Scripts and data for the "The epigenetics effects of transposable elements are genomic context dependent and not restricted to gene silencing" Marta Coronado-Zamora <h1>The epigenetics effects of transposable elements are not restricted to gene silencing</h1> <p>Scripts and data for the manuscript "The epigenetics effects of transposable elements are not restricted to gene silencing".</p> <h2>Directories and files</h2> <ul> <li><strong>TEs with epigenetic effects data</strong>: contains table for the 2,235 polymorphic TEs analyzed</li> <li><strong>Epigenetic effects</strong>: ad-hoc bash scripts to analyze the epigenetic effects of TEs</li> <li><strong>Expression analyses</strong>: ad-hoc bash and R scripts to compute the z-score comparing gene expression between alleles with and without the TE insertion</li> <li><strong>Obtain breakpoints</strong>: scripts to obtain the breakpoint coordinate for TEs absent from genomes</li> <li><strong>Null distribution</strong>: script to select random regions of the genome that matches the location of TE insertions</li> <li><strong>ANALYSES_EPIGENETICS.Rmd</strong>: R Markdown documents with the code used for doing analyses and creating figures</li> </ul> <h2>Citation</h2> <p>Coronado-Zamora & González (2025) The epigenetics effects of transposable elements are not restricted to gene silencing. Genome Biology.</p> <h2>Contact</h2> <p>Project: <a href="https://github.com/GonzalezLab/epigenetic-effects-transposons-dmelanogaster/">https://github.com/GonzalezLab/epigenetic-effects-transposons-dmelanogaster/</a></p> |
| title | GonzalezLab/epigenetic-effects-transposons-dmelanogaster: Scripts and data for the "The epigenetics effects of transposable elements are genomic context dependent and not restricted to gene silencing" |
| url | https://doi.org/10.5281/zenodo.15876977 |