freesurfer_subseg-1.0
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Zenodo
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| Autori principali: | , |
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| Natura: | Recurso digital |
| Pubblicazione: |
Zenodo
2025
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| _version_ | 1866901914543718400 |
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| author | van Heese, Eva d'Angremont, Emile |
| author_facet | van Heese, Eva d'Angremont, Emile |
| contents | <p>This pipeline performs subsegmentations of key subcortical structures (thalamus, hippocampus, brainstem, hypothalamus, amygdala) using FreeSurfer 7 functionalities, and additionally runs SAMSEG to obtain a more accurate estimation of intracranial volume (ICV). It requires preprocessed FreeSurfer recon-all outputs. The subsegmentation and SAMSEG results are integrated into the subject’s freesurfer output directories. The pipeline detects T1-weighted images in the BIDS anat folder, with an option to manually specify the T1 image if multiple are present.</p> |
| format | Recurso digital |
| id | zenodo_https___doi_org_10_5281_zenodo_15877956 |
| institution | Zenodo |
| language | |
| publishDate | 2025 |
| publisher | Zenodo |
| record_format | zenodo |
| spellingShingle | freesurfer_subseg-1.0 van Heese, Eva d'Angremont, Emile Nipoppy pipeline_type:processing pipeline_name:freesurfer_subseg pipeline_version:1.0 schema_version:1 <p>This pipeline performs subsegmentations of key subcortical structures (thalamus, hippocampus, brainstem, hypothalamus, amygdala) using FreeSurfer 7 functionalities, and additionally runs SAMSEG to obtain a more accurate estimation of intracranial volume (ICV). It requires preprocessed FreeSurfer recon-all outputs. The subsegmentation and SAMSEG results are integrated into the subject’s freesurfer output directories. The pipeline detects T1-weighted images in the BIDS anat folder, with an option to manually specify the T1 image if multiple are present.</p> |
| title | freesurfer_subseg-1.0 |
| topic | Nipoppy pipeline_type:processing pipeline_name:freesurfer_subseg pipeline_version:1.0 schema_version:1 |
| url | https://doi.org/10.5281/zenodo.15877956 |