| _version_ | 1866901542913703936 |
|---|---|
| author | Wijaya, Winona |
| author_facet | Wijaya, Winona |
| contents | <p>Vibrio spp. specific groEL/groL/cpn60/hsp60 reference database, formatted for use with the 'assignTaxonomy' function of the DADA2 pipeline.</p> <p> </p> <table style="border-collapse: collapse; width: 100.063%;"><colgroup><col style="width: 27.6797%;"><col style="width: 72.3203%;"></colgroup> <tbody> <tr> <td><strong>File</strong></td> <td><strong>Description</strong></td> </tr> <tr> <td>King2019_DADA2.fasta</td> <td>Reference dataset as described by https://doi.org/10.17605/OSF.IO/4798P, but formatted for use by DADA2.</td> </tr> <tr> <td>full2025_DADA2_all.fasta</td> <td> <p>Full hsp60 sequences of Vibrio spp. taken from Vibrio NCBI RefSeq genomes, with these criteria:</p> <ul> <li>Refseq annotated, excludes atypical genomes & metagenome assembled genomes</li> <li>N50 > 50kb</li> <li>Taxonomy check == "OK"</li> <li>>90% completion; <10% contamination</li> <li>Suppressed RefSeq files removed</li> </ul> </td> </tr> <tr> <td>full2025_DADA2_nosp.fasta</td> <td>Same as above, but excluding those without a species name (i.e. excluding 'Vibrio sp. xxx' where xxx is the strain identifier).</td> </tr> <tr> <td>hsp60_all_refs.tsv</td> <td>Details of the full2025 hsp sequences (accession number, species, strain)</td> </tr> </tbody> </table> |
| format | Recurso digital |
| id | zenodo_https___doi_org_10_5281_zenodo_16757293 |
| institution | Zenodo |
| language | |
| publishDate | 2025 |
| publisher | Zenodo |
| record_format | zenodo |
| spellingShingle | Vibrio spp. specific hsp60 reference database for DADA2 Wijaya, Winona Vibrio Vibrio/classification <p>Vibrio spp. specific groEL/groL/cpn60/hsp60 reference database, formatted for use with the 'assignTaxonomy' function of the DADA2 pipeline.</p> <p> </p> <table style="border-collapse: collapse; width: 100.063%;"><colgroup><col style="width: 27.6797%;"><col style="width: 72.3203%;"></colgroup> <tbody> <tr> <td><strong>File</strong></td> <td><strong>Description</strong></td> </tr> <tr> <td>King2019_DADA2.fasta</td> <td>Reference dataset as described by https://doi.org/10.17605/OSF.IO/4798P, but formatted for use by DADA2.</td> </tr> <tr> <td>full2025_DADA2_all.fasta</td> <td> <p>Full hsp60 sequences of Vibrio spp. taken from Vibrio NCBI RefSeq genomes, with these criteria:</p> <ul> <li>Refseq annotated, excludes atypical genomes & metagenome assembled genomes</li> <li>N50 > 50kb</li> <li>Taxonomy check == "OK"</li> <li>>90% completion; <10% contamination</li> <li>Suppressed RefSeq files removed</li> </ul> </td> </tr> <tr> <td>full2025_DADA2_nosp.fasta</td> <td>Same as above, but excluding those without a species name (i.e. excluding 'Vibrio sp. xxx' where xxx is the strain identifier).</td> </tr> <tr> <td>hsp60_all_refs.tsv</td> <td>Details of the full2025 hsp sequences (accession number, species, strain)</td> </tr> </tbody> </table> |
| title | Vibrio spp. specific hsp60 reference database for DADA2 |
| topic | Vibrio Vibrio/classification |
| url | https://doi.org/10.5281/zenodo.16757293 |