| _version_ | 1866902339965681664 |
|---|---|
| author | Chris Wright Chris Alder Sarah Griffiths Matthew Parker Julian Libiseller-Egger Sam Nicholls Georgette Tanner Natalia Garcia Garcia Neil Horner Pablo Gonzalez Sirisha Hesketh nanofriend |
| author_facet | Chris Wright Chris Alder Sarah Griffiths Matthew Parker Julian Libiseller-Egger Sam Nicholls Georgette Tanner Natalia Garcia Garcia Neil Horner Pablo Gonzalez Sirisha Hesketh nanofriend |
| contents | <h3>Changed</h3> <ul> <li>Reconciled workflow with wf-template v5.5.0.</li> <li>Increasing memory retries for flye deNovo process</li> </ul> <h3>Fixed</h3> <ul> <li><code>makeReport</code> process used to fail with unaligned (u)BAMs as input because unaligned bams were excluded by default by <code>xam_ingress</code>. We fixed this by setting <code>xam_ingress</code> to keep the unaligned files as well.</li> <li><code>bam</code> and <code>bai</code> files from mapping the reads to the reference or draft assembly, depending on mode used, were previously missing from the output directory. They are now included.</li> <li>Single sample reports incorrectly displaying 'de novo assembly failed' on successful samples.</li> </ul> |
| format | Recurso digital |
| id | zenodo_https___doi_org_10_5281_zenodo_16758887 |
| institution | Zenodo |
| language | |
| publishDate | 2025 |
| publisher | Zenodo |
| record_format | zenodo |
| spellingShingle | epi2me-labs/wf-bacterial-genomes: v1.4.2 Chris Wright Chris Alder Sarah Griffiths Matthew Parker Julian Libiseller-Egger Sam Nicholls Georgette Tanner Natalia Garcia Garcia Neil Horner Pablo Gonzalez Sirisha Hesketh nanofriend <h3>Changed</h3> <ul> <li>Reconciled workflow with wf-template v5.5.0.</li> <li>Increasing memory retries for flye deNovo process</li> </ul> <h3>Fixed</h3> <ul> <li><code>makeReport</code> process used to fail with unaligned (u)BAMs as input because unaligned bams were excluded by default by <code>xam_ingress</code>. We fixed this by setting <code>xam_ingress</code> to keep the unaligned files as well.</li> <li><code>bam</code> and <code>bai</code> files from mapping the reads to the reference or draft assembly, depending on mode used, were previously missing from the output directory. They are now included.</li> <li>Single sample reports incorrectly displaying 'de novo assembly failed' on successful samples.</li> </ul> |
| title | epi2me-labs/wf-bacterial-genomes: v1.4.2 |
| url | https://doi.org/10.5281/zenodo.16758887 |