KirklandLab/CRISPR-ScreenAnalysis: v1.0.0
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| Format: | Recurso digital |
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Zenodo
2025
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| _version_ | 1866901639247429632 |
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| author | Kevin Boyd |
| author_facet | Kevin Boyd |
| contents | <p>CRISPR-ScreenAnalysis is an automated Snakemake workflow for pooled CRISPR screen analysis using MAGeCK, supporting both single-end and paired-end data. The pipeline performs FASTQ quality control, sgRNA counting with a user-provided library, use of an automated or custom design matrix generation, and gene-level β score estimation via MAGeCK MLE. Designed for reproducibility and scalability in Slurm-managed HPC environments.</p> |
| format | Recurso digital |
| id | zenodo_https___doi_org_10_5281_zenodo_16809384 |
| institution | Zenodo |
| language | |
| publishDate | 2025 |
| publisher | Zenodo |
| record_format | zenodo |
| spellingShingle | KirklandLab/CRISPR-ScreenAnalysis: v1.0.0 Kevin Boyd <p>CRISPR-ScreenAnalysis is an automated Snakemake workflow for pooled CRISPR screen analysis using MAGeCK, supporting both single-end and paired-end data. The pipeline performs FASTQ quality control, sgRNA counting with a user-provided library, use of an automated or custom design matrix generation, and gene-level β score estimation via MAGeCK MLE. Designed for reproducibility and scalability in Slurm-managed HPC environments.</p> |
| title | KirklandLab/CRISPR-ScreenAnalysis: v1.0.0 |
| url | https://doi.org/10.5281/zenodo.16809384 |