MDSINE2 Cross-Validation Analysis (Healthy Cohort)
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| Format: | Recurso digital |
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2025
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| _version_ | 1866902117321539584 |
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| author | Kim, Younhun Gibson, Travis |
| author_facet | Kim, Younhun Gibson, Travis |
| contents | <p>MDSINE2 Inference Analysis files. This archive contains all output files from the cross-validation inference (with comparator analysis included) for Healthy cohort. (Both healthy and dysbiotic cohorts are required to run the Jupyter Notebook (`fig4_semisynthetic_v2_cache.ipynb`) on our MDSINE2_Paper repo. For the Dysbiotic cohort files, refer to <a href="https://zenodo.org/records/16915340" target="_blank" rel="noopener">https://zenodo.org/records/16915340</a>.</p> <p>For the full project/source pipeline, refer to <a href="https://github.com/gerberlab/MDSINE2_Paper">https://github.com/gerberlab/MDSINE2_Paper</a>.</p> <p>The archive here was created using the command `tar --zstd -cvf`, and then split using the unix "split" command. To unpack these files, please use the following command:</p> <pre><code>cat cross_validation_healthy.tar.zst.part* > cross_validation_healthy.tar.zst tar -I zstd -xvf cross_validation_healthy.tar.zst</code></pre> <p>These files should be unpacked and placed in the paper repository directory (wherever you did `git clone`), so that the `datasets` directory is directly inside `MDSINE2_Paper` repository directory. </p> <p>------------</p> <p>Related zenodo records:</p> <p><a href="https://doi.org/10.5281/zenodo.8208502">https://doi.org/10.5281/zenodo.8208502</a> -- Full MDSINE2 inference on Healthy cohort</p> <p><a href="https://doi.org/10.5281/zenodo.16915340">https://doi.org/10.5281/zenodo.16915340</a> -- MDSINE2 Cross-Validation run (Dysbiotic cohort)</p> <p><a href="https://doi.org/10.5281/zenodo.16915311">https://doi.org/10.5281/zenodo.16915311</a> -- MDSINE2 semisynthetic dataset</p> |
| format | Recurso digital |
| id | zenodo_https___doi_org_10_5281_zenodo_16905647 |
| institution | Zenodo |
| language | |
| publishDate | 2025 |
| publisher | Zenodo |
| record_format | zenodo |
| spellingShingle | MDSINE2 Cross-Validation Analysis (Healthy Cohort) Kim, Younhun Gibson, Travis MDSINE2 <p>MDSINE2 Inference Analysis files. This archive contains all output files from the cross-validation inference (with comparator analysis included) for Healthy cohort. (Both healthy and dysbiotic cohorts are required to run the Jupyter Notebook (`fig4_semisynthetic_v2_cache.ipynb`) on our MDSINE2_Paper repo. For the Dysbiotic cohort files, refer to <a href="https://zenodo.org/records/16915340" target="_blank" rel="noopener">https://zenodo.org/records/16915340</a>.</p> <p>For the full project/source pipeline, refer to <a href="https://github.com/gerberlab/MDSINE2_Paper">https://github.com/gerberlab/MDSINE2_Paper</a>.</p> <p>The archive here was created using the command `tar --zstd -cvf`, and then split using the unix "split" command. To unpack these files, please use the following command:</p> <pre><code>cat cross_validation_healthy.tar.zst.part* > cross_validation_healthy.tar.zst tar -I zstd -xvf cross_validation_healthy.tar.zst</code></pre> <p>These files should be unpacked and placed in the paper repository directory (wherever you did `git clone`), so that the `datasets` directory is directly inside `MDSINE2_Paper` repository directory. </p> <p>------------</p> <p>Related zenodo records:</p> <p><a href="https://doi.org/10.5281/zenodo.8208502">https://doi.org/10.5281/zenodo.8208502</a> -- Full MDSINE2 inference on Healthy cohort</p> <p><a href="https://doi.org/10.5281/zenodo.16915340">https://doi.org/10.5281/zenodo.16915340</a> -- MDSINE2 Cross-Validation run (Dysbiotic cohort)</p> <p><a href="https://doi.org/10.5281/zenodo.16915311">https://doi.org/10.5281/zenodo.16915311</a> -- MDSINE2 semisynthetic dataset</p> |
| title | MDSINE2 Cross-Validation Analysis (Healthy Cohort) |
| topic | MDSINE2 |
| url | https://doi.org/10.5281/zenodo.16905647 |