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Zenodo
2025
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| Accesso online: | https://doi.org/10.5281/zenodo.17088549 |
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| _version_ | 1866902108976971776 |
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| author | Pan, Qingfei |
| author_facet | Pan, Qingfei |
| contents | <p>Here are the test data, containing six samples of different conditions, for <strong><a href="https://jyyulab.github.io/bulkRNAseq_quantification_pipeline/">bulk RNA-seq quantification pipeline 2025</a></strong>.</p> <table style="border-collapse: collapse; width: 100.025%;"><colgroup><col style="width: 14.2587%;"><col style="width: 14.2587%;"><col style="width: 14.2587%;"><col style="width: 14.2587%;"><col style="width: 14.2587%;"><col style="width: 14.2587%;"><col style="width: 14.2587%;"></colgroup> <tbody> <tr> <td> </td> <td><strong>Format</strong></td> <td><strong>Library Type</strong></td> <td><strong>Phred Encoding</strong></td> <td><strong>Species</strong></td> <td><strong>Number of Reads</strong></td> <td><strong>Preparation</strong></td> </tr> <tr> <td><strong>sample1</strong></td> <td>FASTQ</td> <td>Paired-end</td> <td>Phred+33</td> <td>human</td> <td>19,410,373</td> <td>Downsampled from real data</td> </tr> <tr> <td><strong>sample2</strong></td> <td>FASTQ</td> <td>Single-end</td> <td>Phred+33</td> <td>mouse</td> <td>16,005,450</td> <td>Downsampled from real data</td> </tr> <tr> <td><strong>sample3</strong></td> <td>FASTQ, multiple lanes</td> <td>Paired-end</td> <td>Phred+33</td> <td>human</td> <td>19,410,373</td> <td>Split by lane from sample1</td> </tr> <tr> <td><strong>sample4</strong></td> <td>FASTQ, multiple lanes</td> <td>Single-end</td> <td>Phred+33</td> <td>mouse</td> <td>16,005,450</td> <td>Split by lane from sample2</td> </tr> <tr> <td><strong>sample5</strong></td> <td>BAM/SAM (to genome)</td> <td>Paired-end</td> <td>Phred+33</td> <td>human</td> <td>13,856,075</td> <td>Downsampled from real data</td> </tr> <tr> <td><strong>sample6</strong></td> <td>BAM/SAM (to transcriptome)</td> <td>Single-end</td> <td>Phred+33</td> <td>mouse</td> <td>13,533,162</td> <td>Downsampled from real data</td> </tr> </tbody> </table> |
| format | Recurso digital |
| id | zenodo_https___doi_org_10_5281_zenodo_17088549 |
| institution | Zenodo |
| language | |
| publishDate | 2025 |
| publisher | Zenodo |
| record_format | zenodo |
| spellingShingle | Test Data for Bulk RNA-seq Pipeline 2025 Pan, Qingfei <p>Here are the test data, containing six samples of different conditions, for <strong><a href="https://jyyulab.github.io/bulkRNAseq_quantification_pipeline/">bulk RNA-seq quantification pipeline 2025</a></strong>.</p> <table style="border-collapse: collapse; width: 100.025%;"><colgroup><col style="width: 14.2587%;"><col style="width: 14.2587%;"><col style="width: 14.2587%;"><col style="width: 14.2587%;"><col style="width: 14.2587%;"><col style="width: 14.2587%;"><col style="width: 14.2587%;"></colgroup> <tbody> <tr> <td> </td> <td><strong>Format</strong></td> <td><strong>Library Type</strong></td> <td><strong>Phred Encoding</strong></td> <td><strong>Species</strong></td> <td><strong>Number of Reads</strong></td> <td><strong>Preparation</strong></td> </tr> <tr> <td><strong>sample1</strong></td> <td>FASTQ</td> <td>Paired-end</td> <td>Phred+33</td> <td>human</td> <td>19,410,373</td> <td>Downsampled from real data</td> </tr> <tr> <td><strong>sample2</strong></td> <td>FASTQ</td> <td>Single-end</td> <td>Phred+33</td> <td>mouse</td> <td>16,005,450</td> <td>Downsampled from real data</td> </tr> <tr> <td><strong>sample3</strong></td> <td>FASTQ, multiple lanes</td> <td>Paired-end</td> <td>Phred+33</td> <td>human</td> <td>19,410,373</td> <td>Split by lane from sample1</td> </tr> <tr> <td><strong>sample4</strong></td> <td>FASTQ, multiple lanes</td> <td>Single-end</td> <td>Phred+33</td> <td>mouse</td> <td>16,005,450</td> <td>Split by lane from sample2</td> </tr> <tr> <td><strong>sample5</strong></td> <td>BAM/SAM (to genome)</td> <td>Paired-end</td> <td>Phred+33</td> <td>human</td> <td>13,856,075</td> <td>Downsampled from real data</td> </tr> <tr> <td><strong>sample6</strong></td> <td>BAM/SAM (to transcriptome)</td> <td>Single-end</td> <td>Phred+33</td> <td>mouse</td> <td>13,533,162</td> <td>Downsampled from real data</td> </tr> </tbody> </table> |
| title | Test Data for Bulk RNA-seq Pipeline 2025 |
| url | https://doi.org/10.5281/zenodo.17088549 |