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Zenodo
2025
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| Online Access: | https://doi.org/10.5281/zenodo.17188227 |
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| _version_ | 1866902080911835136 |
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| author | Kim, Samuel H Higashino, Soon Il Steffes, Lea C. Li, Li Pasca, Anca M. Kumar, Maya E. Kuo, Christin S. Krasnow, Mark A. Greenleaf, William J. |
| author_facet | Kim, Samuel H Higashino, Soon Il Steffes, Lea C. Li, Li Pasca, Anca M. Kumar, Maya E. Kuo, Christin S. Krasnow, Mark A. Greenleaf, William J. |
| contents | <p>Data repository for the Human Lung Development Atlas:</p> <p>Preprint: https://doi.org/10.1101/2025.09.24.678382</p> <p>Github: https://github.com/GreenleafLab/HLDA</p> <p>This repository contains compressed ChromBPNet predicted sequence to accessibility contribution scores for each cell type. </p> <p>celltype_average_contribution_scores.tar.gz = contains the predicted contribution scores (celltype.h5) and a bigwig for visualization of predicted contribution scores (celltype.bw). Also recommend loading the peaks for each cell type of interest as BED files, available within the Zenodo record for HLDA-ATAC ArchR Projects (Part 1).</p> <p>To visualize the bigwig files for each cell type, please reference the DynSeq page and the WashU Epigenome Browser</p> <p>-DynSeq: https://kundajelab.github.io/dynseq-pages/</p> <p>-WashU Epigenome Browser: https://epigenomegateway.wustl.edu/browser/</p> |
| format | Recurso digital |
| id | zenodo_https___doi_org_10_5281_zenodo_17188227 |
| institution | Zenodo |
| language | |
| publishDate | 2025 |
| publisher | Zenodo |
| record_format | zenodo |
| spellingShingle | HLDA-ChromBPNet Contribution Scores and BigWigs (Part 3) Kim, Samuel H Higashino, Soon Il Steffes, Lea C. Li, Li Pasca, Anca M. Kumar, Maya E. Kuo, Christin S. Krasnow, Mark A. Greenleaf, William J. <p>Data repository for the Human Lung Development Atlas:</p> <p>Preprint: https://doi.org/10.1101/2025.09.24.678382</p> <p>Github: https://github.com/GreenleafLab/HLDA</p> <p>This repository contains compressed ChromBPNet predicted sequence to accessibility contribution scores for each cell type. </p> <p>celltype_average_contribution_scores.tar.gz = contains the predicted contribution scores (celltype.h5) and a bigwig for visualization of predicted contribution scores (celltype.bw). Also recommend loading the peaks for each cell type of interest as BED files, available within the Zenodo record for HLDA-ATAC ArchR Projects (Part 1).</p> <p>To visualize the bigwig files for each cell type, please reference the DynSeq page and the WashU Epigenome Browser</p> <p>-DynSeq: https://kundajelab.github.io/dynseq-pages/</p> <p>-WashU Epigenome Browser: https://epigenomegateway.wustl.edu/browser/</p> |
| title | HLDA-ChromBPNet Contribution Scores and BigWigs (Part 3) |
| url | https://doi.org/10.5281/zenodo.17188227 |