khanlab/zarrnii: v0.10.0-alpha1

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Main Authors: Ali Khan, BKarat, Karl5766
Format: Recurso digital
Published: Zenodo 2025
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_version_ 1866902329148571648
author Ali Khan
BKarat
Karl5766
author_facet Ali Khan
BKarat
Karl5766
contents <h2>What's Changed</h2> <ul> <li>Add SegmentationCleaner scaled processing plugin for artifact removal by @Copilot in https://github.com/khanlab/zarrnii/pull/125</li> <li>Fix shape validation to only check spatial dimensions by @Copilot in https://github.com/khanlab/zarrnii/pull/124</li> <li>Add compute_centroids function for binary segmentation object localization by @Copilot in https://github.com/khanlab/zarrnii/pull/126</li> <li>Parallelize compute_centroids() using map_overlap by @Copilot in https://github.com/khanlab/zarrnii/pull/134</li> <li>Add MIP visualization with multi-channel colormaps and configurable slabs by @Copilot in https://github.com/khanlab/zarrnii/pull/127</li> <li>Add label_centroids method to ZarrNiiAtlas for mapping centroids to atlas regions by @Copilot in https://github.com/khanlab/zarrnii/pull/132</li> <li>binning fix, always use bin width =1 by @akhanf in https://github.com/khanlab/zarrnii/pull/137</li> </ul> <p><strong>Full Changelog</strong>: https://github.com/khanlab/zarrnii/compare/v0.9.0-alpha1...v0.10.0-alpha1</p>
format Recurso digital
id zenodo_https___doi_org_10_5281_zenodo_17651502
institution Zenodo
language
publishDate 2025
publisher Zenodo
record_format zenodo
spellingShingle khanlab/zarrnii: v0.10.0-alpha1
Ali Khan
BKarat
Karl5766
<h2>What's Changed</h2> <ul> <li>Add SegmentationCleaner scaled processing plugin for artifact removal by @Copilot in https://github.com/khanlab/zarrnii/pull/125</li> <li>Fix shape validation to only check spatial dimensions by @Copilot in https://github.com/khanlab/zarrnii/pull/124</li> <li>Add compute_centroids function for binary segmentation object localization by @Copilot in https://github.com/khanlab/zarrnii/pull/126</li> <li>Parallelize compute_centroids() using map_overlap by @Copilot in https://github.com/khanlab/zarrnii/pull/134</li> <li>Add MIP visualization with multi-channel colormaps and configurable slabs by @Copilot in https://github.com/khanlab/zarrnii/pull/127</li> <li>Add label_centroids method to ZarrNiiAtlas for mapping centroids to atlas regions by @Copilot in https://github.com/khanlab/zarrnii/pull/132</li> <li>binning fix, always use bin width =1 by @akhanf in https://github.com/khanlab/zarrnii/pull/137</li> </ul> <p><strong>Full Changelog</strong>: https://github.com/khanlab/zarrnii/compare/v0.9.0-alpha1...v0.10.0-alpha1</p>
title khanlab/zarrnii: v0.10.0-alpha1
url https://doi.org/10.5281/zenodo.17651502