Curated metadata from SPET genotyping of five European forest tree species
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| Format: | Recurso digital |
| Langue: | anglais |
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2025
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| author | Farsakoglou, Anna-Maria Dauphin, Benjamin Olsson, Sanna Pinosio, Sara Milesi, Pascal Reutimann, Oliver Ullrich, Kristian Liepelt, Sascha Spanu, Ilaria Piotti, Andrea BAGNOLI, FRANCESCA Alizoti, Paraskevi (Evi) Heer, Katrin Opgenoorth, Lars Giovanni G, Vendramin Gonzalez-Martinez, Santiago C Alia, Ricardo Grivet, Delphine Rellstab, Christian Gugerli, Felix Fady, Bruno Scotti, Ivan ARAVANOPOULOS, FILIPPOS |
| author_facet | Farsakoglou, Anna-Maria Dauphin, Benjamin Olsson, Sanna Pinosio, Sara Milesi, Pascal Reutimann, Oliver Ullrich, Kristian Liepelt, Sascha Spanu, Ilaria Piotti, Andrea BAGNOLI, FRANCESCA Alizoti, Paraskevi (Evi) Heer, Katrin Opgenoorth, Lars Giovanni G, Vendramin Gonzalez-Martinez, Santiago C Alia, Ricardo Grivet, Delphine Rellstab, Christian Gugerli, Felix Fady, Bruno Scotti, Ivan ARAVANOPOULOS, FILIPPOS |
| contents | <p>This dataset contains curated and harmonised metadata extracted from five NCBI BioProjects associated with the H2020 GenTree SPET genotyping of <em>Abies alba </em>(AA), <em>Pinus cembra </em>(PC), <em>Pinus halepensis </em>(PH), <em>Pinus nigra</em> (PN) and <em>Taxus baccata </em>(TB). Metadata fields include sample identifiers, organism, experiment information, sequencing platform, library strategy and run-level attributes.</p> <p>Raw FASTQ files are <em>not</em> included in this Zenodo record. These can be accessed directly through the corresponding NCBI SRA BioProjects and SRP directories:<br>• <strong>PRJNA791225</strong> (<em>A. alba</em>): <a href="https://identifiers.org/ncbi/insdc.sra:SRP384498(2022)" target="_new" rel="noopener">https://identifiers.org/ncbi/insdc.sra:SRP384498(2022)</a><br>• <strong>PRJNA791226</strong> (<em>P. cembra</em>): <a href="https://identifiers.org/ncbi/insdc.sra:SRP384504(2022)" target="_new" rel="noopener">https://identifiers.org/ncbi/insdc.sra:SRP384504(2022)</a><br>• <strong>PRJNA791282</strong> (<em>P. halepensis</em>): <a href="https://identifiers.org/ncbi/insdc.sra:SRP384719(2022)" target="_new" rel="noopener">https://identifiers.org/ncbi/insdc.sra:SRP384719(2022)</a><br>• <strong>PRJNA791288</strong> (<em>P. nigra</em>): <a href="https://identifiers.org/ncbi/insdc.sra:SRP384503(2022)" target="_new" rel="noopener">https://identifiers.org/ncbi/insdc.sra:SRP384503(2022)</a><br>• <strong>PRJNA791291</strong> (<em>T. baccata</em>): <a href="https://identifiers.org/ncbi/insdc.sra:SRP384501(2022)" target="_new" rel="noopener">https://identifiers.org/ncbi/insdc.sra:SRP384501(2022)</a></p> <p>The metadata included here were cleaned, standardised and merged across projects to support the analyses described in the associated manuscript. Users may reuse these metadata in accordance with the NCBI data usage policy and the license of this Zenodo deposit.</p> |
| format | Recurso digital |
| id | zenodo_https___doi_org_10_5281_zenodo_17761809 |
| institution | Zenodo |
| language | eng |
| publishDate | 2025 |
| publisher | Zenodo |
| record_format | zenodo |
| spellingShingle | Curated metadata from SPET genotyping of five European forest tree species Farsakoglou, Anna-Maria Dauphin, Benjamin Olsson, Sanna Pinosio, Sara Milesi, Pascal Reutimann, Oliver Ullrich, Kristian Liepelt, Sascha Spanu, Ilaria Piotti, Andrea BAGNOLI, FRANCESCA Alizoti, Paraskevi (Evi) Heer, Katrin Opgenoorth, Lars Giovanni G, Vendramin Gonzalez-Martinez, Santiago C Alia, Ricardo Grivet, Delphine Rellstab, Christian Gugerli, Felix Fady, Bruno Scotti, Ivan ARAVANOPOULOS, FILIPPOS SNPs Accession Numbers Genetic Diversity Biodiversity Conservation Conifer Species <p>This dataset contains curated and harmonised metadata extracted from five NCBI BioProjects associated with the H2020 GenTree SPET genotyping of <em>Abies alba </em>(AA), <em>Pinus cembra </em>(PC), <em>Pinus halepensis </em>(PH), <em>Pinus nigra</em> (PN) and <em>Taxus baccata </em>(TB). Metadata fields include sample identifiers, organism, experiment information, sequencing platform, library strategy and run-level attributes.</p> <p>Raw FASTQ files are <em>not</em> included in this Zenodo record. These can be accessed directly through the corresponding NCBI SRA BioProjects and SRP directories:<br>• <strong>PRJNA791225</strong> (<em>A. alba</em>): <a href="https://identifiers.org/ncbi/insdc.sra:SRP384498(2022)" target="_new" rel="noopener">https://identifiers.org/ncbi/insdc.sra:SRP384498(2022)</a><br>• <strong>PRJNA791226</strong> (<em>P. cembra</em>): <a href="https://identifiers.org/ncbi/insdc.sra:SRP384504(2022)" target="_new" rel="noopener">https://identifiers.org/ncbi/insdc.sra:SRP384504(2022)</a><br>• <strong>PRJNA791282</strong> (<em>P. halepensis</em>): <a href="https://identifiers.org/ncbi/insdc.sra:SRP384719(2022)" target="_new" rel="noopener">https://identifiers.org/ncbi/insdc.sra:SRP384719(2022)</a><br>• <strong>PRJNA791288</strong> (<em>P. nigra</em>): <a href="https://identifiers.org/ncbi/insdc.sra:SRP384503(2022)" target="_new" rel="noopener">https://identifiers.org/ncbi/insdc.sra:SRP384503(2022)</a><br>• <strong>PRJNA791291</strong> (<em>T. baccata</em>): <a href="https://identifiers.org/ncbi/insdc.sra:SRP384501(2022)" target="_new" rel="noopener">https://identifiers.org/ncbi/insdc.sra:SRP384501(2022)</a></p> <p>The metadata included here were cleaned, standardised and merged across projects to support the analyses described in the associated manuscript. Users may reuse these metadata in accordance with the NCBI data usage policy and the license of this Zenodo deposit.</p> |
| title | Curated metadata from SPET genotyping of five European forest tree species |
| topic | SNPs Accession Numbers Genetic Diversity Biodiversity Conservation Conifer Species |
| url | https://doi.org/10.5281/zenodo.17761809 |