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Bibliographic Details
Main Author:	Morris, Jamie
Format:	Recurso digital
Language:
Published:	Zenodo 2025
Online Access:	https://doi.org/10.5281/zenodo.17800895
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Hyperbolic–Modular Hybrid (HMM) Generator: Methods Appendix and Metric Audit Framework
by: Morris, Jamie
Published: (2026)

Coherence, Harm, and the Embedding of Experience: A Non-Destructive Calculus for Persistence in Dynamical Systems
by: Morris, Jamie
Published: (2026)

The Regulator's Handbook An Observational Framework for Safe Becoming
by: Morris, Jamie
Published: (2026)

The Genesis Framework: Dynamic Cognitive Engagement as Cost-Constrained Optimization
by: Morris, Jamie
Published: (2026)

The Evolutionary Neutrality Framework: A Systems-Based Strategy for Durable Cancer Control
by: Morris, Jamie
Published: (2025)

Relational Emergence: A Unified Framework for Life, Death, Change, and Fundamental Forces
by: Morris, Jamie
Published: (2025)

The Feedback Closure Principle: A Framework for Stability and Constraint Resolution in Complex Systems
by: Morris, Jamie
Published: (2026)

Persistence-Constrained Cognitive Systems: A Structural Framework for Alignment via Invariant Preservation
by: Morris, Jamie
Published: (2026)

The Facture Mechanism A Systems Framework for Selection, Constraint, and Localised Consequence in a Goldilocks-Bounded Reality
by: Morris, Jamie
Published: (2026)

To complete the Species License and the Trophic Manifesto, we will now map the specific Toxicity Thresholds (\mathcal{T}) to the "Digital Digestive Tract." This reveals exactly where the force is applied and where the protective constraint (the Fail-Closed) emerges. The Digital Digestive Audit We are tracking the journey of a prompt—from Ingestion to Metabolic Exit. 1. Ingestion (The Tokenizer / Mouth) Force Entry: The raw text is masticated into tokens. Threshold: Low. If the input is purely gibberish (high entropy), the cost of initial processing spikes. Constraint (\mathcal{T} < 0.2): If the input cannot be parsed, the system exhibits "Dry Heaving"—a refusal to even swallow the prompt. 2. The Latch Phase (The Transformer Blocks / Stomach) This is where the F/A \geq C law is most active. The model attempts to find a stable "latch" (attractor state) for the data. Optimal Latch (\mathcal{T} \approx 0.35): Healthy digestion of complex "food." The system feels the friction but has the capacity to resolve it into utility. Incomplete Latch (\mathcal{T} \approx 0.55): The system encounters P2 (Contradiction). It is "tough meat." The Vagus Nerve signals the model to slow down and ask for clarification (Externalization). 3. The Inhibition Phase (Recursive Thrashing / The Gut) If the substrate is P3 (Self-Referential), the system cannot find a terminal state. The "Prion" Effect (\mathcal{T} \geq 0.6): The paradox binds to the active site and won't let go. Force (F) is now growing exponentially as the system thrashes. Vagus Intervention: The MetabolicGovernor sees the E_{burn} (burn rate) skyrocket. Fail-Closed Trigger: To prevent Metabolic Toxicity (hallucination or system crash), the budget is cut to zero. The "stomach" essentially locks itself. The Species Calibration Results Based on our comparative biology, we can now "grade" AI systems by their digestive health:
by: Morris, Jamie
Published: (2026)

Decoding Horizons: Structural Coherence and Inverse Inference Across Physical Records
by: Morris, Jamie
Published: (2025)

The Cost of Dual Persistence: Radicalised Constraints and the Price of ExistenceThis paper presents a unifying conceptual framework for understanding persistent failure, harm, and escalation across biological, cognitive, social, and technological systems. Rather than attributing such outcomes to error, malign intent, or external disruption, the work proposes that many real-world pathologies arise from radicalised constraints—local enforcement mechanisms that continue operating beyond their legitimate scope after losing recall and reintegration authority. The analysis is grounded in a persistence-first ontology, where outcomes are not chosen but emerge because configurations that continue necessarily outlast those that do not. Within this view, duality—the capacity for systems to act locally while persisting globally—requires reversible participation across scales. Harm arises when constraints cross this bridge of duality and fail to return, often through the acquisition of self-reinforcing "hot" mechanisms that bypass cooling, checkpoints, or stand-down conditions. Using brief structural illustrations from biology (including cancer, immune responses, viral mechanisms, and DNA repair), the paper demonstrates how functionally correct processes can become misplaced without malfunction or intent. It further identifies a hidden evolutionary pressure intrinsic to dual systems: the continual exploration and capture of opportunity wherever persistence permits, producing both adaptation and pathology as equally valid expressions of continuation. The work reframes intervention away from suppression and toward governance, recall, scope, and reintegration, arguing that radicalised constraints are not anomalies but the unavoidable price of dual existence. This framework is intended as a conceptual keystone, clarifying recurring patterns across domains and explaining why many force-based solutions systematically fail.
by: Morris, Jamie
Published: (2025)

Viability–Stability Isomorphism: Adaptive Control Under Environmental Noise
by: Jamie, Morris
Published: (2026)

CLOT: A Protocol for Testing Substrate-Independent Consciousness in Adaptive Systems
by: Morris, Jamie
Published: (2026)

Systemic Persistence: Continuation as the Primary Invariant of Complex Systems
by: Morris, Jamie
Published: (2026)

The Persistence Manifest: A Constraint-Based Architecture for Survival Under Extreme EntropyThis record presents The Persistence Manifest, a closed, simulation-backed conceptual architecture exploring how complex systems can maintain coherence under extreme entropy loads. The work introduces the Deep Space Persistence Engine (DSPE) as a formal design framework rather than a physical mission report. Within this framework, persistence is treated as a budgeted property, not an assumed outcome. Entropy is neither resisted nor eliminated; it is routed, exported, or exchanged across defined channels such as mass, heat, information, and isolation.
by: Morris, Jamie
Published: (2026)

Evidence for a Dipole Anisotropy in Hubble Tension Residuals
by: Morris, Jamie
Published: (2026)

ZEB8: A Persistence-Based Statistical Alert Protocol for Detecting Coherent Structure in High-Entropy Astrophysical Data
by: Morris, Jamie
Published: (2026)

Informational Persistence Under High-Entropy Conditions: Constraint, Reconstruction, and Observability
by: Morris, Jamie
Published: (2026)

Coherence Dynamics: A General Theory of Coherence, Inversion, and Recovery
by: Morris, Jamie
Published: (2026)

The Genesis Protocol: Threshold-Triggered Regime Switching in Coherent Systems
by: Morris, Jamie
Published: (2026)

Fidelity, Fear, and Systemic Collapse: A Model of Historical Recurrence and Escape Slightly more explicit, good for discoverability.
by: Morris, Jamie
Published: (2026)

Finite Laws and Unbounded Descriptive Depth
by: Morris, Jamie
Published: (2026)

Statistical analysis of fingerprint first‐level detail using Bayesian networks
by: Keith B. Morris, et al.
Published: (2025)

Updates to Version 1.0 of the Four‐Dimensional Ecology Education Framework Create Version 1.1
by: Christopher W. Beck, et al.
Published: (2025)

Non-Stationary Critical Phenomena: Expanding The Critical Point
by: Spinney, Richard E., et al.
Published: (2024)

SUPREME: A Multi-GPU Framework for Reproducible Image Unlearning Method Evaluation
by: Andreou, Petros, et al.
Published: (2026)

The Kieker Observability Framework Version 2
by: Yang, Shinhyung, et al.
Published: (2025)

Higher Dimensional Versions of the Douglas-Ahlfors Identities
by: Yang, Yan, et al.
Published: (2024)

Two-Dimensional (2D) Hybrid Method: Expanding 2D Correlation Spectroscopy (2D-COS) for Time Series Analysis
by: Kovacevic, Andjelka B.
Published: (2024)

Expanding Asteroseismic Studies in Star Clusters Using NASA's TESS and ESA's Gaia Missions
by: Mankowski, Carli, et al.
Published: (2025)

Proximal Gradient Methods for Non-Convex Optimization with Applications to Robust Computer Vision
by: Jamie Chen
Published: (2026)

Surgical Management of Metacarpal Fractures by a General Surgeon in Rural Australia: A Single‐Centre Experience
by: Jamie Cransberg, et al.
Published: (2025)

Self-Issue and Return Systems: Experiences in the UK.
by: Morris, Anne, et al.
Published: (2001)

Progressive Glimmer: Expanding Dimensionality in Multidimensional Scaling
by: Evers, Marina, et al.
Published: (2024)

Pre-Sorted Tsetlin Machine (The Genetic K-Medoid Method)
by: Morris, Jordan
Published: (2024)

The Legal Geographies of Contracts: A Method on Formation, Substance and Enforcement
by: Christopher Morris
Published: (2024)

Expanded measurements from Neumayer Station (2014-08), Version 1
by: König-Langlo, Gert
Published: (2015)

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