_version_ 1866902195176210432
author Corley, Nathaniel
Mathis, Simon
Krishna, Rohith
Bauer, Magnus S.
Thompson, Tuscan R.
Ahern, Woody
Kazman, Maxwell W.
Brent, Rafael I.
Didi, Kieran
Kubaney, Andrew
McHugh, Liam
Nagle, Andrew
Favor, Adam
Kshirsagar, Meghana
Sturmfels, Pascal
Li, Yinuo
Butcher, John
Qiang, Bo
Schaaf, Luna L.
Mitra, Ria
Campbell, Kerrie
Zhang, Opa
Weissman, Rose
Humphreys, Ian R.
Cong, Qian
Jiang, Hanlun
Funk, Jason
Sonthalia, Satyaki
Lio, Pietro
Baker, David
DiMaio, Frank
author_facet Corley, Nathaniel
Mathis, Simon
Krishna, Rohith
Bauer, Magnus S.
Thompson, Tuscan R.
Ahern, Woody
Kazman, Maxwell W.
Brent, Rafael I.
Didi, Kieran
Kubaney, Andrew
McHugh, Liam
Nagle, Andrew
Favor, Adam
Kshirsagar, Meghana
Sturmfels, Pascal
Li, Yinuo
Butcher, John
Qiang, Bo
Schaaf, Luna L.
Mitra, Ria
Campbell, Kerrie
Zhang, Opa
Weissman, Rose
Humphreys, Ian R.
Cong, Qian
Jiang, Hanlun
Funk, Jason
Sonthalia, Satyaki
Lio, Pietro
Baker, David
DiMaio, Frank
contents A research-oriented data toolkit for training biomolecular deep-learning foundation models. AtomWorks provides tools for parsing, cleaning, manipulating, and converting biological data (structures, sequences, small molecules) as well as advanced dataset featurization and sampling for deep learning workflows.
format Recurso digital
id zenodo_https___doi_org_10_5281_zenodo_17872151
institution Zenodo
language
publishDate 2025
publisher Zenodo
record_format zenodo
spellingShingle atomworks
Corley, Nathaniel
Mathis, Simon
Krishna, Rohith
Bauer, Magnus S.
Thompson, Tuscan R.
Ahern, Woody
Kazman, Maxwell W.
Brent, Rafael I.
Didi, Kieran
Kubaney, Andrew
McHugh, Liam
Nagle, Andrew
Favor, Adam
Kshirsagar, Meghana
Sturmfels, Pascal
Li, Yinuo
Butcher, John
Qiang, Bo
Schaaf, Luna L.
Mitra, Ria
Campbell, Kerrie
Zhang, Opa
Weissman, Rose
Humphreys, Ian R.
Cong, Qian
Jiang, Hanlun
Funk, Jason
Sonthalia, Satyaki
Lio, Pietro
Baker, David
DiMaio, Frank
bioinformatics
machine-learning
deep-learning
protein-structure
biotite
structural-biology
A research-oriented data toolkit for training biomolecular deep-learning foundation models. AtomWorks provides tools for parsing, cleaning, manipulating, and converting biological data (structures, sequences, small molecules) as well as advanced dataset featurization and sampling for deep learning workflows.
title atomworks
topic bioinformatics
machine-learning
deep-learning
protein-structure
biotite
structural-biology
url https://doi.org/10.5281/zenodo.17872151