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2016
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| Online Access: | https://doi.org/10.5281/zenodo.18379090 |
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| _version_ | 1866901929785819136 |
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| author | Chaste Developers |
| author_facet | Chaste Developers |
| contents | <h2>Chaste impedance stand-alone binary</h2> <p><strong>Introduction:</strong><br><br>This program is entirely based on the tutorial given at <a href="https://chaste.github.io/docs/user-tutorials/simpleimpedanceproblem/">https://chaste.github.io/docs/user-tutorials/simpleimpedanceproblem/</a><br>Please see that page for more detail.</p> <p><strong>Files included:</strong></p> <pre><code>README.txt (similar description, but with outdated links) ChasteLungImpedance (the executable file) ChasteLungImpedance.cpp (the source file projects/AirPROM/apps/src/ChasteLungImpedance.cpp included here for information) ChasteLungImpedance.sh (a wrapper for running the executable ChasteLungImpedance with the correct libraries) CITATION.txt (how to cite Chaste) docs (generic Chaste documentation folder including docs/FileFormats.html) libs (libraries folder) TestSubject002.edge (edge file for an example input mesh) TestSubject002.node (node file for an example input mesh</code></pre> <p><strong>How to run:</strong></p> <p>To test that it works with the samples file to produce the same output as <a href="https://chaste.github.io/docs/user-tutorials/simpleimpedanceproblem/">https://chaste.github.io/docs/user-tutorials/simpleimpedanceproblem/</a></p> <pre><code># From within this folder ChasteLungImpedance_v1_64bit$ ./ChasteLungImpedance.sh TestSubject002 == Output ==================================================== ... Loading mesh files with base file name: TestSubject002 Scaling all airway radii by a factor of 0.7 R5 = 0.644251 kPa.s.L^-1 R20 = 0.572072 kPa.s.L^-1 R5 - R20 = 0.0721783 kPa.s.L^-1 Rrs = 0.586149 kPa.s.L^-1 X5 = 0.234321 kPa.s.L^-1 Fres = 8.27187 Hz Ax = -0.136698 kPa.L^-1 # From within this folder with file extension ChasteLungImpedance_v1_64bit$ ./ChasteLungImpedance.sh TestSubject002.node # From outside this folder giving relative path to executable and data files $ ChasteLungImpedance_v1_64bit/ChasteLungImpedance.sh ChasteLungImpedance_v1_64bit/TestSubject002 # Changing the scaling factor ChasteLungImpedance_v1_64bit$ ./ChasteLungImpedance.sh -scale_radii 1.0 ./TestSubject002</code></pre> |
| format | Recurso digital |
| id | zenodo_https___doi_org_10_5281_zenodo_18379090 |
| institution | Zenodo |
| language | |
| publishDate | 2016 |
| publisher | Zenodo |
| record_format | zenodo |
| spellingShingle | Chaste impedance stand-alone binary Chaste Developers <h2>Chaste impedance stand-alone binary</h2> <p><strong>Introduction:</strong><br><br>This program is entirely based on the tutorial given at <a href="https://chaste.github.io/docs/user-tutorials/simpleimpedanceproblem/">https://chaste.github.io/docs/user-tutorials/simpleimpedanceproblem/</a><br>Please see that page for more detail.</p> <p><strong>Files included:</strong></p> <pre><code>README.txt (similar description, but with outdated links) ChasteLungImpedance (the executable file) ChasteLungImpedance.cpp (the source file projects/AirPROM/apps/src/ChasteLungImpedance.cpp included here for information) ChasteLungImpedance.sh (a wrapper for running the executable ChasteLungImpedance with the correct libraries) CITATION.txt (how to cite Chaste) docs (generic Chaste documentation folder including docs/FileFormats.html) libs (libraries folder) TestSubject002.edge (edge file for an example input mesh) TestSubject002.node (node file for an example input mesh</code></pre> <p><strong>How to run:</strong></p> <p>To test that it works with the samples file to produce the same output as <a href="https://chaste.github.io/docs/user-tutorials/simpleimpedanceproblem/">https://chaste.github.io/docs/user-tutorials/simpleimpedanceproblem/</a></p> <pre><code># From within this folder ChasteLungImpedance_v1_64bit$ ./ChasteLungImpedance.sh TestSubject002 == Output ==================================================== ... Loading mesh files with base file name: TestSubject002 Scaling all airway radii by a factor of 0.7 R5 = 0.644251 kPa.s.L^-1 R20 = 0.572072 kPa.s.L^-1 R5 - R20 = 0.0721783 kPa.s.L^-1 Rrs = 0.586149 kPa.s.L^-1 X5 = 0.234321 kPa.s.L^-1 Fres = 8.27187 Hz Ax = -0.136698 kPa.L^-1 # From within this folder with file extension ChasteLungImpedance_v1_64bit$ ./ChasteLungImpedance.sh TestSubject002.node # From outside this folder giving relative path to executable and data files $ ChasteLungImpedance_v1_64bit/ChasteLungImpedance.sh ChasteLungImpedance_v1_64bit/TestSubject002 # Changing the scaling factor ChasteLungImpedance_v1_64bit$ ./ChasteLungImpedance.sh -scale_radii 1.0 ./TestSubject002</code></pre> |
| title | Chaste impedance stand-alone binary |
| url | https://doi.org/10.5281/zenodo.18379090 |