| _version_ | 1866901638257573888 |
|---|---|
| author | Poulet, Christophe Baiwir, Dominique |
| author_facet | Poulet, Christophe Baiwir, Dominique |
| contents | <div> <div> <div> <div># ImmunAID-ms-parameters</div> <br> <div>Normalization parameters used to generate the proteomics data for the paper:</div> <br> <div>**Adult patients with autoinflammation of unknown origin partially phenocopy the immune presentation of Still’s disease**</div> <br> <div>## Content of FragPipe parameters folder</div> <div> </div> </div> This repository includes two key configuration files for the FragPipe/MSFragger pipeline.</div> <br> <div>- The `fragger.params` file defines all database search settings (e.g. enzyme specificity, mass tolerances, allowed missed cleavages, and fixed/variable modifications), ensuring the MS/MS search is fully reproducible and its search space is clearly documented.</div> <br> <div>- The `sdrf.tsv` file follows the Sample and Data Relationship Format and describes the experimental design and sample metadata for each LC-MS/MS run (such as biological conditions, replicates, and raw file paths), enabling correct sample grouping, downstream statistical analysis, and transparent linkage between raw data and biological context.</div> <div> </div> <div> <div> <div>## How to cite:</div> <div>If you use these parameters, please cite it as follows:</div> <br> <div>Poulet, C., & Baiwir, D. (2026). ImmunAID-ms-parameters (Version 1.0.0) [Dataset]. University of Liège - GIGA Institute. Zenodo. https://doi.org/10.5281/zenodo.18413673</div> <div>License: CC BY-NC-ND 4.0</div> <div>Repository: https://gitlab.uliege.be/giga-rheumatology/public/immunaid-ms-parameters</div> </div> </div> </div> |
| format | Recurso digital |
| id | zenodo_https___doi_org_10_5281_zenodo_18413673 |
| institution | Zenodo |
| language | |
| publishDate | 2026 |
| publisher | Zenodo |
| record_format | zenodo |
| spellingShingle | ImmunAID-ms-parameters Poulet, Christophe Baiwir, Dominique <div> <div> <div> <div># ImmunAID-ms-parameters</div> <br> <div>Normalization parameters used to generate the proteomics data for the paper:</div> <br> <div>**Adult patients with autoinflammation of unknown origin partially phenocopy the immune presentation of Still’s disease**</div> <br> <div>## Content of FragPipe parameters folder</div> <div> </div> </div> This repository includes two key configuration files for the FragPipe/MSFragger pipeline.</div> <br> <div>- The `fragger.params` file defines all database search settings (e.g. enzyme specificity, mass tolerances, allowed missed cleavages, and fixed/variable modifications), ensuring the MS/MS search is fully reproducible and its search space is clearly documented.</div> <br> <div>- The `sdrf.tsv` file follows the Sample and Data Relationship Format and describes the experimental design and sample metadata for each LC-MS/MS run (such as biological conditions, replicates, and raw file paths), enabling correct sample grouping, downstream statistical analysis, and transparent linkage between raw data and biological context.</div> <div> </div> <div> <div> <div>## How to cite:</div> <div>If you use these parameters, please cite it as follows:</div> <br> <div>Poulet, C., & Baiwir, D. (2026). ImmunAID-ms-parameters (Version 1.0.0) [Dataset]. University of Liège - GIGA Institute. Zenodo. https://doi.org/10.5281/zenodo.18413673</div> <div>License: CC BY-NC-ND 4.0</div> <div>Repository: https://gitlab.uliege.be/giga-rheumatology/public/immunaid-ms-parameters</div> </div> </div> </div> |
| title | ImmunAID-ms-parameters |
| url | https://doi.org/10.5281/zenodo.18413673 |