Deterministic Architecture of Organic Matter: A Theoretical Validation of the Structure-Property-Composition Triad via AlphaFold 3 Atomic Diffusion
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| Format: | Recurso digital |
| Langue: | anglais |
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Zenodo
2026
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| _version_ | 1866901107317407744 |
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| author | Pal, Asmak |
| author_facet | Pal, Asmak |
| contents | <p>The fundamental axiom of organic chemistry—that molecular structure dictates function—is</p> <p>often viewed as a one-way causal street. However, this study proposes a recursive theoretical</p> <p>model where the intrinsic chemical properties of atoms (composition) and their resultant bonding</p> <p>potential are the primary determinants of complex organic structures. By utilizing AlphaFold 3</p> <p>(AF3) as a structural proof-of-concept, we demonstrate that the transition from atomic "tokens"</p> <p>to 3D conformations is a deterministic process governed by electronic and thermodynamic</p> <p>constraints. Our research proves that the vast diversity of organic substances is not an</p> <p>accidental geometric occurrence but a physical manifestation of the underlying chemical</p> <p>property landscape.</p> |
| format | Recurso digital |
| id | zenodo_https___doi_org_10_5281_zenodo_18498218 |
| institution | Zenodo |
| language | eng |
| publishDate | 2026 |
| publisher | Zenodo |
| record_format | zenodo |
| spellingShingle | Deterministic Architecture of Organic Matter: A Theoretical Validation of the Structure-Property-Composition Triad via AlphaFold 3 Atomic Diffusion Pal, Asmak <p>The fundamental axiom of organic chemistry—that molecular structure dictates function—is</p> <p>often viewed as a one-way causal street. However, this study proposes a recursive theoretical</p> <p>model where the intrinsic chemical properties of atoms (composition) and their resultant bonding</p> <p>potential are the primary determinants of complex organic structures. By utilizing AlphaFold 3</p> <p>(AF3) as a structural proof-of-concept, we demonstrate that the transition from atomic "tokens"</p> <p>to 3D conformations is a deterministic process governed by electronic and thermodynamic</p> <p>constraints. Our research proves that the vast diversity of organic substances is not an</p> <p>accidental geometric occurrence but a physical manifestation of the underlying chemical</p> <p>property landscape.</p> |
| title | Deterministic Architecture of Organic Matter: A Theoretical Validation of the Structure-Property-Composition Triad via AlphaFold 3 Atomic Diffusion |
| url | https://doi.org/10.5281/zenodo.18498218 |