| _version_ | 1866902053320654848 |
|---|---|
| author | Sebe, Clemence Ferret, Olivier Névéol, Aurélie COHEN-BOULAKIA, Sarah |
| author_facet | Sebe, Clemence Ferret, Olivier Névéol, Aurélie COHEN-BOULAKIA, Sarah |
| contents | <div> <div>CPL-Code is a corpus describing bioinformatics tools names in executable code of Nextflow workflows. These annotations are available in the BRAT Rapid Annotation Tool (BRAT) standoff format (https://brat.nlplab.org/standoff.html).</div> <br> <div>This corpus is composed of 797 processes related to Nextflow workflows randomly selected from Github with a total of 78,562 tokens and 1,914 annotated tokens corresponding to 1,911 tool occurences (421 unique tools).</div> <div> </div> <h3>Repository organisation</h3> <div>The articles are separated into six different directories:</div> <br> <div> <ul> <li>Five folders (iteration_{i}) are provided, each corresponding to a different split of the training data. This allows experiments to be run on different splits.</li> <li>The last folder contains five articles used for testing.</li> </ul> </div> <br> <h3>Contact</h3> <br> <div>Clémence Sebe, clemence.sebe@universite-paris-saclay.fr</div> <br> <h3>Funding</h3> <br> <div>This work received support from the National Research Agency under the France 2030 program, with reference to ANR-22-PESN-0007.</div> </div> |
| format | Recurso digital |
| id | zenodo_https___doi_org_10_5281_zenodo_18526760 |
| institution | Zenodo |
| language | |
| publishDate | 2026 |
| publisher | Zenodo |
| record_format | zenodo |
| spellingShingle | CPL-Code: a corpus annotated with bioinformatics tools names in executable code of Nextflow workflows Sebe, Clemence Ferret, Olivier Névéol, Aurélie COHEN-BOULAKIA, Sarah <div> <div>CPL-Code is a corpus describing bioinformatics tools names in executable code of Nextflow workflows. These annotations are available in the BRAT Rapid Annotation Tool (BRAT) standoff format (https://brat.nlplab.org/standoff.html).</div> <br> <div>This corpus is composed of 797 processes related to Nextflow workflows randomly selected from Github with a total of 78,562 tokens and 1,914 annotated tokens corresponding to 1,911 tool occurences (421 unique tools).</div> <div> </div> <h3>Repository organisation</h3> <div>The articles are separated into six different directories:</div> <br> <div> <ul> <li>Five folders (iteration_{i}) are provided, each corresponding to a different split of the training data. This allows experiments to be run on different splits.</li> <li>The last folder contains five articles used for testing.</li> </ul> </div> <br> <h3>Contact</h3> <br> <div>Clémence Sebe, clemence.sebe@universite-paris-saclay.fr</div> <br> <h3>Funding</h3> <br> <div>This work received support from the National Research Agency under the France 2030 program, with reference to ANR-22-PESN-0007.</div> </div> |
| title | CPL-Code: a corpus annotated with bioinformatics tools names in executable code of Nextflow workflows |
| url | https://doi.org/10.5281/zenodo.18526760 |