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Main Authors:	Pham, Thai, Farrow, Melissa, Migas, Lukasz, Dufresne, Martin, Colley, Madeline, Allen, Jamie, Kruse, Angela, deCaestecker, Mark, Van de Plas, Raf, Spraggins, Jeffrey
Format:	Recurso digital
Language:
Published:	Zenodo 2026
Online Access:	https://doi.org/10.5281/zenodo.18716459
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_version_	1866902076299149312
author	Pham, Thai Farrow, Melissa Migas, Lukasz Dufresne, Martin Colley, Madeline Allen, Jamie Kruse, Angela deCaestecker, Mark Van de Plas, Raf Spraggins, Jeffrey
author_facet	Pham, Thai Farrow, Melissa Migas, Lukasz Dufresne, Martin Colley, Madeline Allen, Jamie Kruse, Angela deCaestecker, Mark Van de Plas, Raf Spraggins, Jeffrey
contents	<p>Positive and Negative mode MALDI IMS data of kidney from donor VAN0031-LK-2-80</p>
format	Recurso digital
id	zenodo_https___doi_org_10_5281_zenodo_18716459
institution	Zenodo
language
publishDate	2026
publisher	Zenodo
record_format	zenodo
spellingShingle	A Multimodal Imaging Pipeline for the Discovery of Molecular Markers of Cellular Neighborhoods Pham, Thai Farrow, Melissa Migas, Lukasz Dufresne, Martin Colley, Madeline Allen, Jamie Kruse, Angela deCaestecker, Mark Van de Plas, Raf Spraggins, Jeffrey <p>Positive and Negative mode MALDI IMS data of kidney from donor VAN0031-LK-2-80</p>
title	A Multimodal Imaging Pipeline for the Discovery of Molecular Markers of Cellular Neighborhoods
url	https://doi.org/10.5281/zenodo.18716459

if (filemtime($filename) + $maxlifetime < time()) { unlink($filename); $count++; } } return $count; } /** * A function that is called internally when session data is to be saved. * * @param string $sessId The current session ID * @param string $data The session data to write * * @return bool */ protected function saveSession($sessId, $data): bool { $sessFile = $this->path . '/sess_' . $sessId; if ($handle = fopen($sessFile, 'w')) { $return = false; // Lock the file for exclusive access to avoid issues with multiple // processes writing session simultaneously: if (flock($handle, LOCK_EX)) { $return = fwrite($handle, $data); // Make sure that there's no trailing data by truncating the file to // the correct length: ftruncate($handle, strlen($data)); fflush($handle); flock($handle, LOCK_UN); } fclose($handle); if ($return !== false) { return true; } } // If we got this far, something went wrong with the file output... // It is tempting to throw an exception here, but this code is called // outside of the context of exception handling, so all we can do is // echo a message.

// Anecdotal testing Today and Yesterday seems to indicate destroy() // is called by the garbage collector and everything is good. // Something to keep in mind though. return 0; } /** * Write function that is called when session data is to be saved. * * @param string $sessId The current session ID * @param string $data The session data to write * * @return bool */ public function write($sessId, $data): bool { if ($this->writesDisabled) { return true; } return $this->saveSession($sessId, $data); } /** * A function that is called internally when session data is to be saved. * * @param string $sessId The current session ID * @param string $data The session data to write * * @return bool */ abstract protected function saveSession($sessId, $data): bool; }

* * @return void */ public function writeClose() { // The assumption is that we're using PHP's ext/session. // session_write_close() will actually overwrite $_SESSION with an // empty array on completion -- which leads to a mismatch between what // is in the storage object and $_SESSION. To get around this, we // temporarily reset $_SESSION to an array, and then re-link it to // the storage object. // // Additionally, while you _can_ write to $_SESSION following a // session_write_close() operation, no changes made to it will be // flushed to the session handler. As such, we now mark the storage // object isImmutable. $storage = $this->getStorage(); if (! $storage->isImmutable()) { $_SESSION = $storage->toArray(true); session_write_close(); $storage->fromArray($_SESSION); $storage->markImmutable(); } } /** * Attempt to set the session name * * If the session has already been started, or if the name provided fails * validation, an exception will be raised. * * @param string $name * @return SessionManager * @throws Exception\InvalidArgumentException */ public function setName($name) { if ($this->sessionExists()) { throw new Exception\InvalidArgumentException( 'Cannot set session name after a session has already started'

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