Analysis code for Lee et al.
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Zenodo
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| Autore principale: | |
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| Natura: | Recurso digital |
| Pubblicazione: |
Zenodo
2026
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| _version_ | 1866902315734138880 |
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| author | Lee, UkJin |
| author_facet | Lee, UkJin |
| contents | <p>This repository contains the analysis code for the following publication:</p> <blockquote> <p><strong>Post-mitotic transcriptional activation and 3D regulatory interactions show locus- and differentiation-specific sensitivity to cohesin depletion</strong></p> <p>UkJin Lee, Alejandra Laguillo-Diego, Daniela Magliulo, Wilfred Wong, Kritika Kasliwal, Zhangli Ni, Lingling Cheng, Jieru Li, Bobbie Pelham-Webb, Alexandros Pertsinidis, Christina Leslie, Effie Apostolou</p> </blockquote> <h2>Included analyses</h2> <ul> <li>Micro-C processing pipeline</li> <li>Micro-C analysis</li> <li>Loop analysis</li> <li>Virtual 4C and 4C-seq</li> <li>RNA-seq analysis</li> <li>Miscellaneous analysis & utilities</li> </ul> <h2>Data availability</h2> <p>Raw and processed data: <a href="https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE288339">GSE288339</a></p> |
| format | Recurso digital |
| id | zenodo_https___doi_org_10_5281_zenodo_18765986 |
| institution | Zenodo |
| language | |
| publishDate | 2026 |
| publisher | Zenodo |
| record_format | zenodo |
| spellingShingle | Analysis code for Lee et al. Lee, UkJin <p>This repository contains the analysis code for the following publication:</p> <blockquote> <p><strong>Post-mitotic transcriptional activation and 3D regulatory interactions show locus- and differentiation-specific sensitivity to cohesin depletion</strong></p> <p>UkJin Lee, Alejandra Laguillo-Diego, Daniela Magliulo, Wilfred Wong, Kritika Kasliwal, Zhangli Ni, Lingling Cheng, Jieru Li, Bobbie Pelham-Webb, Alexandros Pertsinidis, Christina Leslie, Effie Apostolou</p> </blockquote> <h2>Included analyses</h2> <ul> <li>Micro-C processing pipeline</li> <li>Micro-C analysis</li> <li>Loop analysis</li> <li>Virtual 4C and 4C-seq</li> <li>RNA-seq analysis</li> <li>Miscellaneous analysis & utilities</li> </ul> <h2>Data availability</h2> <p>Raw and processed data: <a href="https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE288339">GSE288339</a></p> |
| title | Analysis code for Lee et al. |
| url | https://doi.org/10.5281/zenodo.18765986 |