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2026
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| Acceso en línea: | https://doi.org/10.5281/zenodo.18785799 |
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| _version_ | 1866901458603999232 |
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| author | Schmey, Tamara |
| author_facet | Schmey, Tamara |
| contents | <p>Annotation Data for <em>Alternaria atra</em> Genomes</p> <p>This archive contains genome annotation data for <em>Alternaria atra</em> isolates from the study:<br>“<em>Alternaria atra</em> from distinct ecological roles share functional genomic repertoires”<br>by Tamara Schmey, Karen Bahar, Christopher Tominello-Ramirez, German Sepulveda Chavera, and Remco Stam</p> <p>Raw Oxford Nanopore Technologies (ONT) sequencing reads and the genome assemblies for isolates T001 and T003 are deposited in the European Nucleotide Archive (ENA) under project accession PRJEB105036.</p> <p>In addition to these newly assembled genomes, we annotated two publicly available <em>A. atra</em> genomes downloaded from NCBI using the same pipeline to ensure comparability.</p> <p>Re-annotated public assemblies:<br>- CS162 — NCBI accession GCA_907166805.1<br>- MOD1FUNGI7 — NCBI accession GCA_004634305.1</p> <p>All four genomes (T001, T003, CS162, and MOD1FUNGI7) were annotated using funannotate v1.8.17.</p> <p>This archive contains:<br>- Genome assembly sequences in FASTA format (*.fa.gz)<br>- Gene annotations in GFF3 format (*.gff3) </p> <p>While annotations for the newly assembled genomes were submitted alongside the assemblies to ENA, the re-annotations of publicly available genomes are not hosted in a central repository. In the interest of transparency, reproducibility, and open science, we provide all annotations generated in this study here. </p> <p>For questions regarding the dataset or annotation workflow, please contact the corresponding author Remco Stam as described in the publication. </p> |
| format | Recurso digital |
| id | zenodo_https___doi_org_10_5281_zenodo_18785799 |
| institution | Zenodo |
| language | |
| publishDate | 2026 |
| publisher | Zenodo |
| record_format | zenodo |
| spellingShingle | Annotation data for Alternaria atra genomes Schmey, Tamara <p>Annotation Data for <em>Alternaria atra</em> Genomes</p> <p>This archive contains genome annotation data for <em>Alternaria atra</em> isolates from the study:<br>“<em>Alternaria atra</em> from distinct ecological roles share functional genomic repertoires”<br>by Tamara Schmey, Karen Bahar, Christopher Tominello-Ramirez, German Sepulveda Chavera, and Remco Stam</p> <p>Raw Oxford Nanopore Technologies (ONT) sequencing reads and the genome assemblies for isolates T001 and T003 are deposited in the European Nucleotide Archive (ENA) under project accession PRJEB105036.</p> <p>In addition to these newly assembled genomes, we annotated two publicly available <em>A. atra</em> genomes downloaded from NCBI using the same pipeline to ensure comparability.</p> <p>Re-annotated public assemblies:<br>- CS162 — NCBI accession GCA_907166805.1<br>- MOD1FUNGI7 — NCBI accession GCA_004634305.1</p> <p>All four genomes (T001, T003, CS162, and MOD1FUNGI7) were annotated using funannotate v1.8.17.</p> <p>This archive contains:<br>- Genome assembly sequences in FASTA format (*.fa.gz)<br>- Gene annotations in GFF3 format (*.gff3) </p> <p>While annotations for the newly assembled genomes were submitted alongside the assemblies to ENA, the re-annotations of publicly available genomes are not hosted in a central repository. In the interest of transparency, reproducibility, and open science, we provide all annotations generated in this study here. </p> <p>For questions regarding the dataset or annotation workflow, please contact the corresponding author Remco Stam as described in the publication. </p> |
| title | Annotation data for Alternaria atra genomes |
| url | https://doi.org/10.5281/zenodo.18785799 |