Data and Code to Reproduce Plots in "The influence of cognitive evolution on handaxe making skill in the Acheulean"

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Autore principale:	Muller, Antoine
Natura:	Recurso digital
Pubblicazione:	Zenodo 2026
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_version_	1866901983610273792
author	Muller, Antoine
author_facet	Muller, Antoine
contents	<p>This repository contains the data and code to reproduce the plots presented in the paper "The influence of cognitive evolution on handaxe making skill in the Acheulean" by Antoine Muller, Ceri Shipton, Gonen Sharon, and Leore Grosman.</p> <h3><strong>Getting Started</strong></h3> <p>Download all files and in 04MATLABscript (line 9) change the file location ('C:\...') to the folder where you downloaded the contents. Running the script will produce the plots in directory 02plots that were used to generate the results figures in the manuscript.</p> <p>The code was run with Windows 11 and MATLAB version R2024b with the following toolboxes installed:</p> <ul> <li>curve_fitting_toolbox</li> <li>statistics_toolbox</li> <li>text_analytics_toolbox</li> </ul> <h3><br><strong>Contents</strong></h3> <p><strong>01dependencies</strong><br>Directory of MATLAB scripts accessed from MathWorks FileExchange</p> <ul> <li>plot_ellipse.m</li> <li>scatplot.m</li> </ul> <p>References:<br>Ma, M (2005). plot_ellipse (https://se.mathworks.com/matlabcentral/fileexchange/8604-plot_ellipse), MATLAB Central File Exchange, Retrieved April 12, 2025</p> <p>Sanchez, A (2005). scatplot (https://se.mathworks.com/matlabcentral/fileexchange/8577-scatplot), MATLAB Central File Exchange, Retrieved June 18, 2023</p> <p><strong>02plots</strong><br>Directory of expected plots contained in figures including:<br>MATLAB Figure#    ManuscriptFig#</p> <ul> <li>Figure 1      Fig3 a</li> <li>Figure 2      Fig3 b upper</li> <li>Figure 3      Fig3 b lower</li> <li>Figure 4      Fig3 c upper</li> <li>Figure 5      Fig3 c middle</li> <li>Figure 6      Fig3 c lower</li> <li>Figure 7      Fig5</li> <li>Figure 8      Fig6</li> <li>Figure 9      Fig7 upper</li> <li>Figure 10    Fig7 lower left</li> <li>Figure 11    Fig7 lower middle</li> <li>Figure 12    Fig7 lower right</li> <li>Figure 13    Fig8 inset of a</li> <li>Figure 14    Fig8 a and b</li> </ul> <p><strong>03data</strong><br>xlsx file containing all data needed to reproduce plots</p> <ul> <li>Sheet 1 - HandaxeData</li> <li>Sheet 2 - SiteDates</li> <li>Sheet 3 - CraniaData (Data from Dataset S04 of Püschel et al 2024)</li> </ul> <p>Reference:<br>Püschel, T.A., Nicholson, S.L., Baker, J., Barton, R.A., Venditti, C., 2024. Hominin brain size increase has emerged from within-species encephalization. Proc. Natl. Acad. Sci. 121, e2409542121. https://doi.org/10.1073/pnas.2409542121.</p> <p><br><strong>04MATLABscript</strong><br>MATLAB (R2024b) script for generating plots.</p>
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id	zenodo_https___doi_org_10_5281_zenodo_18821894
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publishDate	2026
publisher	Zenodo
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spellingShingle	Data and Code to Reproduce Plots in "The influence of cognitive evolution on handaxe making skill in the Acheulean" Muller, Antoine <p>This repository contains the data and code to reproduce the plots presented in the paper "The influence of cognitive evolution on handaxe making skill in the Acheulean" by Antoine Muller, Ceri Shipton, Gonen Sharon, and Leore Grosman.</p> <h3><strong>Getting Started</strong></h3> <p>Download all files and in 04MATLABscript (line 9) change the file location ('C:\...') to the folder where you downloaded the contents. Running the script will produce the plots in directory 02plots that were used to generate the results figures in the manuscript.</p> <p>The code was run with Windows 11 and MATLAB version R2024b with the following toolboxes installed:</p> <ul> <li>curve_fitting_toolbox</li> <li>statistics_toolbox</li> <li>text_analytics_toolbox</li> </ul> <h3><br><strong>Contents</strong></h3> <p><strong>01dependencies</strong><br>Directory of MATLAB scripts accessed from MathWorks FileExchange</p> <ul> <li>plot_ellipse.m</li> <li>scatplot.m</li> </ul> <p>References:<br>Ma, M (2005). plot_ellipse (https://se.mathworks.com/matlabcentral/fileexchange/8604-plot_ellipse), MATLAB Central File Exchange, Retrieved April 12, 2025</p> <p>Sanchez, A (2005). scatplot (https://se.mathworks.com/matlabcentral/fileexchange/8577-scatplot), MATLAB Central File Exchange, Retrieved June 18, 2023</p> <p><strong>02plots</strong><br>Directory of expected plots contained in figures including:<br>MATLAB Figure#    ManuscriptFig#</p> <ul> <li>Figure 1      Fig3 a</li> <li>Figure 2      Fig3 b upper</li> <li>Figure 3      Fig3 b lower</li> <li>Figure 4      Fig3 c upper</li> <li>Figure 5      Fig3 c middle</li> <li>Figure 6      Fig3 c lower</li> <li>Figure 7      Fig5</li> <li>Figure 8      Fig6</li> <li>Figure 9      Fig7 upper</li> <li>Figure 10    Fig7 lower left</li> <li>Figure 11    Fig7 lower middle</li> <li>Figure 12    Fig7 lower right</li> <li>Figure 13    Fig8 inset of a</li> <li>Figure 14    Fig8 a and b</li> </ul> <p><strong>03data</strong><br>xlsx file containing all data needed to reproduce plots</p> <ul> <li>Sheet 1 - HandaxeData</li> <li>Sheet 2 - SiteDates</li> <li>Sheet 3 - CraniaData (Data from Dataset S04 of Püschel et al 2024)</li> </ul> <p>Reference:<br>Püschel, T.A., Nicholson, S.L., Baker, J., Barton, R.A., Venditti, C., 2024. Hominin brain size increase has emerged from within-species encephalization. Proc. Natl. Acad. Sci. 121, e2409542121. https://doi.org/10.1073/pnas.2409542121.</p> <p><br><strong>04MATLABscript</strong><br>MATLAB (R2024b) script for generating plots.</p>
title	Data and Code to Reproduce Plots in "The influence of cognitive evolution on handaxe making skill in the Acheulean"
url	https://doi.org/10.5281/zenodo.18821894

if (filemtime($filename) + $maxlifetime < time()) { unlink($filename); $count++; } } return $count; } /** * A function that is called internally when session data is to be saved. * * @param string $sessId The current session ID * @param string $data The session data to write * * @return bool */ protected function saveSession($sessId, $data): bool { $sessFile = $this->path . '/sess_' . $sessId; if ($handle = fopen($sessFile, 'w')) { $return = false; // Lock the file for exclusive access to avoid issues with multiple // processes writing session simultaneously: if (flock($handle, LOCK_EX)) { $return = fwrite($handle, $data); // Make sure that there's no trailing data by truncating the file to // the correct length: ftruncate($handle, strlen($data)); fflush($handle); flock($handle, LOCK_UN); } fclose($handle); if ($return !== false) { return true; } } // If we got this far, something went wrong with the file output... // It is tempting to throw an exception here, but this code is called // outside of the context of exception handling, so all we can do is // echo a message.

// Anecdotal testing Today and Yesterday seems to indicate destroy() // is called by the garbage collector and everything is good. // Something to keep in mind though. return 0; } /** * Write function that is called when session data is to be saved. * * @param string $sessId The current session ID * @param string $data The session data to write * * @return bool */ public function write($sessId, $data): bool { if ($this->writesDisabled) { return true; } return $this->saveSession($sessId, $data); } /** * A function that is called internally when session data is to be saved. * * @param string $sessId The current session ID * @param string $data The session data to write * * @return bool */ abstract protected function saveSession($sessId, $data): bool; }

* * @return void */ public function writeClose() { // The assumption is that we're using PHP's ext/session. // session_write_close() will actually overwrite $_SESSION with an // empty array on completion -- which leads to a mismatch between what // is in the storage object and $_SESSION. To get around this, we // temporarily reset $_SESSION to an array, and then re-link it to // the storage object. // // Additionally, while you _can_ write to $_SESSION following a // session_write_close() operation, no changes made to it will be // flushed to the session handler. As such, we now mark the storage // object isImmutable. $storage = $this->getStorage(); if (! $storage->isImmutable()) { $_SESSION = $storage->toArray(true); session_write_close(); $storage->fromArray($_SESSION); $storage->markImmutable(); } } /** * Attempt to set the session name * * If the session has already been started, or if the name provided fails * validation, an exception will be raised. * * @param string $name * @return SessionManager * @throws Exception\InvalidArgumentException */ public function setName($name) { if ($this->sessionExists()) { throw new Exception\InvalidArgumentException( 'Cannot set session name after a session has already started'

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