SamOliveiraLab/Deepweed: Deepweed v1.0.0

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Main Authors: Akindipe, Bukola, Oyeniran, Tolulope, Islam, Tasmia, joshua, scheel, Josephs, Eric, Oliveira, Samuel
Format: Recurso digital
Published: Zenodo 2026
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author Akindipe, Bukola
Oyeniran, Tolulope
Islam, Tasmia
joshua, scheel
Josephs, Eric
Oliveira, Samuel
author_facet Akindipe, Bukola
Oyeniran, Tolulope
Islam, Tasmia
joshua, scheel
Josephs, Eric
Oliveira, Samuel
contents <h2>Deepweed v1.0.0</h2> <h3>What's included</h3> <ul> <li>End-to-end duckweed segmentation + tracking + lineage inference pipeline</li> <li>Petri dish mode (JPEG/PNG sequence) and microfluidics mode (AVI)</li> <li>Pretrained U-Net weights included via Git LFS</li> </ul> <h3>How to run</h3> <ul> <li>Follow README installation steps</li> <li>Run: <code>paper_analysis/Duckweed_Paper_Analysis.ipynb</code></li> </ul>
format Recurso digital
id zenodo_https___doi_org_10_5281_zenodo_18844283
institution Zenodo
language
publishDate 2026
publisher Zenodo
record_format zenodo
spellingShingle SamOliveiraLab/Deepweed: Deepweed v1.0.0
Akindipe, Bukola
Oyeniran, Tolulope
Islam, Tasmia
joshua, scheel
Josephs, Eric
Oliveira, Samuel
<h2>Deepweed v1.0.0</h2> <h3>What's included</h3> <ul> <li>End-to-end duckweed segmentation + tracking + lineage inference pipeline</li> <li>Petri dish mode (JPEG/PNG sequence) and microfluidics mode (AVI)</li> <li>Pretrained U-Net weights included via Git LFS</li> </ul> <h3>How to run</h3> <ul> <li>Follow README installation steps</li> <li>Run: <code>paper_analysis/Duckweed_Paper_Analysis.ipynb</code></li> </ul>
title SamOliveiraLab/Deepweed: Deepweed v1.0.0
url https://doi.org/10.5281/zenodo.18844283