varfish-org/varfish-server: v1.4.0
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| Format: | Recurso digital |
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Zenodo
2026
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| _version_ | 1866901952996048896 |
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| author | Manuel Holtgrewe Oliver Stolpe Gregor Mikko Nieminen varfish-bot Max Xiaohang Zhao Fabian Brand Svetozar N Meghna Ahuja Bhasin Clemens Messerschmidt incardon Johannes Helmuth |
| author_facet | Manuel Holtgrewe Oliver Stolpe Gregor Mikko Nieminen varfish-bot Max Xiaohang Zhao Fabian Brand Svetozar N Meghna Ahuja Bhasin Clemens Messerschmidt incardon Johannes Helmuth |
| contents | <h2><a href="https://github.com/varfish-org/varfish-server/compare/v1.3.2...v1.4.0">1.4.0</a> (2026-03-09)</h2> <h3>Features</h3> <ul> <li>show diff in filter settings when settings changed after query (<a href="https://github.com/varfish-org/varfish-server/issues/2503">#2503</a>) (<a href="https://github.com/varfish-org/varfish-server/commit/1edd1164a478eba4defcacec52b38fa081295cf0">1edd116</a>)</li> </ul> <h3>Bug Fixes</h3> <ul> <li>bamstats now showing in case qc (<a href="https://github.com/varfish-org/varfish-server/issues/2499">#2499</a>) (<a href="https://github.com/varfish-org/varfish-server/commit/59c40e50640d3821e57a4ce9f9513ad49406b071">59c40e5</a>)</li> <li>bump reev lib for empty clinvar response issue (<a href="https://github.com/varfish-org/varfish-server/issues/2525">#2525</a>) (<a href="https://github.com/varfish-org/varfish-server/commit/feefa00a927da638f236e3486a2bddaade12de3f">feefa00</a>)</li> <li>distinguish mane transcripts borrowed from grch38 (<a href="https://github.com/varfish-org/varfish-server/issues/2530">#2530</a>) (<a href="https://github.com/varfish-org/varfish-server/issues/2531">#2531</a>) (<a href="https://github.com/varfish-org/varfish-server/commit/bc8fe556edbb18039796f4236463250a7f52c5fa">bc8fe55</a>)</li> <li>extending clinvar filter for conflicting value (<a href="https://github.com/varfish-org/varfish-server/issues/2505">#2505</a>) (<a href="https://github.com/varfish-org/varfish-server/commit/cf7e89c2e5126789e6be9b273e5f7c8716097248">cf7e89c</a>)</li> <li>filtering in the case list does not update the shown cases (<a href="https://github.com/varfish-org/varfish-server/issues/2364">#2364</a>) (<a href="https://github.com/varfish-org/varfish-server/issues/2496">#2496</a>) (<a href="https://github.com/varfish-org/varfish-server/commit/7d7c68f0b1550c2734307c56a1abb31d73b08cf5">7d7c68f</a>)</li> <li>flags filter doesn't filter for flags (<a href="https://github.com/varfish-org/varfish-server/issues/2534">#2534</a>) (<a href="https://github.com/varfish-org/varfish-server/commit/694eb4922dfa868da4889f3b4b1782eec1b6b4b2">694eb49</a>)</li> <li>further db variant stat computation adaptations (<a href="https://github.com/varfish-org/varfish-server/issues/2536">#2536</a>) (<a href="https://github.com/varfish-org/varfish-server/commit/a4ab5634eec4e34e0d2df2d3ac43e459e62c33f3">a4ab563</a>)</li> <li>genomic region filter always prefixes chr (<a href="https://github.com/varfish-org/varfish-server/issues/2498">#2498</a>) (<a href="https://github.com/varfish-org/varfish-server/commit/c332f04efd6e92a239d8001b2f61b7da4b8113e3">c332f04</a>)</li> <li>issuing another query might lead to broken results (<a href="https://github.com/varfish-org/varfish-server/issues/2277">#2277</a>) (<a href="https://github.com/varfish-org/varfish-server/issues/2495">#2495</a>) (<a href="https://github.com/varfish-org/varfish-server/commit/7de812c880661b55d74f492d82345790f9ce437f">7de812c</a>)</li> <li>page reload in results table (<a href="https://github.com/varfish-org/varfish-server/issues/2502">#2502</a>) (<a href="https://github.com/varfish-org/varfish-server/commit/4ca3a656a9e3fc4e35382e28610d59063853d0c5">4ca3a65</a>)</li> <li>update sv query presets for medgen (<a href="https://github.com/varfish-org/varfish-server/issues/2585">#2585</a>) (<a href="https://github.com/varfish-org/varfish-server/commit/b3eaf0afc2f8a0332c69e7bef8a415a8724eec8f">b3eaf0a</a>)</li> <li>update tables import truncate with reset identity (<a href="https://github.com/varfish-org/varfish-server/issues/2572">#2572</a>) (<a href="https://github.com/varfish-org/varfish-server/commit/5a70955a1a7d9514ef748c0b116d852e89e1af81">5a70955</a>)</li> <li>variant stat computation fails if dp missing (<a href="https://github.com/varfish-org/varfish-server/issues/2533">#2533</a>) (<a href="https://github.com/varfish-org/varfish-server/commit/0f839716880528e809b557b1061636e41bdf60ff">0f83971</a>)</li> </ul> |
| format | Recurso digital |
| id | zenodo_https___doi_org_10_5281_zenodo_18933605 |
| institution | Zenodo |
| language | |
| publishDate | 2026 |
| publisher | Zenodo |
| record_format | zenodo |
| spellingShingle | varfish-org/varfish-server: v1.4.0 Manuel Holtgrewe Oliver Stolpe Gregor Mikko Nieminen varfish-bot Max Xiaohang Zhao Fabian Brand Svetozar N Meghna Ahuja Bhasin Clemens Messerschmidt incardon Johannes Helmuth <h2><a href="https://github.com/varfish-org/varfish-server/compare/v1.3.2...v1.4.0">1.4.0</a> (2026-03-09)</h2> <h3>Features</h3> <ul> <li>show diff in filter settings when settings changed after query (<a href="https://github.com/varfish-org/varfish-server/issues/2503">#2503</a>) (<a href="https://github.com/varfish-org/varfish-server/commit/1edd1164a478eba4defcacec52b38fa081295cf0">1edd116</a>)</li> </ul> <h3>Bug Fixes</h3> <ul> <li>bamstats now showing in case qc (<a href="https://github.com/varfish-org/varfish-server/issues/2499">#2499</a>) (<a href="https://github.com/varfish-org/varfish-server/commit/59c40e50640d3821e57a4ce9f9513ad49406b071">59c40e5</a>)</li> <li>bump reev lib for empty clinvar response issue (<a href="https://github.com/varfish-org/varfish-server/issues/2525">#2525</a>) (<a href="https://github.com/varfish-org/varfish-server/commit/feefa00a927da638f236e3486a2bddaade12de3f">feefa00</a>)</li> <li>distinguish mane transcripts borrowed from grch38 (<a href="https://github.com/varfish-org/varfish-server/issues/2530">#2530</a>) (<a href="https://github.com/varfish-org/varfish-server/issues/2531">#2531</a>) (<a href="https://github.com/varfish-org/varfish-server/commit/bc8fe556edbb18039796f4236463250a7f52c5fa">bc8fe55</a>)</li> <li>extending clinvar filter for conflicting value (<a href="https://github.com/varfish-org/varfish-server/issues/2505">#2505</a>) (<a href="https://github.com/varfish-org/varfish-server/commit/cf7e89c2e5126789e6be9b273e5f7c8716097248">cf7e89c</a>)</li> <li>filtering in the case list does not update the shown cases (<a href="https://github.com/varfish-org/varfish-server/issues/2364">#2364</a>) (<a href="https://github.com/varfish-org/varfish-server/issues/2496">#2496</a>) (<a href="https://github.com/varfish-org/varfish-server/commit/7d7c68f0b1550c2734307c56a1abb31d73b08cf5">7d7c68f</a>)</li> <li>flags filter doesn't filter for flags (<a href="https://github.com/varfish-org/varfish-server/issues/2534">#2534</a>) (<a href="https://github.com/varfish-org/varfish-server/commit/694eb4922dfa868da4889f3b4b1782eec1b6b4b2">694eb49</a>)</li> <li>further db variant stat computation adaptations (<a href="https://github.com/varfish-org/varfish-server/issues/2536">#2536</a>) (<a href="https://github.com/varfish-org/varfish-server/commit/a4ab5634eec4e34e0d2df2d3ac43e459e62c33f3">a4ab563</a>)</li> <li>genomic region filter always prefixes chr (<a href="https://github.com/varfish-org/varfish-server/issues/2498">#2498</a>) (<a href="https://github.com/varfish-org/varfish-server/commit/c332f04efd6e92a239d8001b2f61b7da4b8113e3">c332f04</a>)</li> <li>issuing another query might lead to broken results (<a href="https://github.com/varfish-org/varfish-server/issues/2277">#2277</a>) (<a href="https://github.com/varfish-org/varfish-server/issues/2495">#2495</a>) (<a href="https://github.com/varfish-org/varfish-server/commit/7de812c880661b55d74f492d82345790f9ce437f">7de812c</a>)</li> <li>page reload in results table (<a href="https://github.com/varfish-org/varfish-server/issues/2502">#2502</a>) (<a href="https://github.com/varfish-org/varfish-server/commit/4ca3a656a9e3fc4e35382e28610d59063853d0c5">4ca3a65</a>)</li> <li>update sv query presets for medgen (<a href="https://github.com/varfish-org/varfish-server/issues/2585">#2585</a>) (<a href="https://github.com/varfish-org/varfish-server/commit/b3eaf0afc2f8a0332c69e7bef8a415a8724eec8f">b3eaf0a</a>)</li> <li>update tables import truncate with reset identity (<a href="https://github.com/varfish-org/varfish-server/issues/2572">#2572</a>) (<a href="https://github.com/varfish-org/varfish-server/commit/5a70955a1a7d9514ef748c0b116d852e89e1af81">5a70955</a>)</li> <li>variant stat computation fails if dp missing (<a href="https://github.com/varfish-org/varfish-server/issues/2533">#2533</a>) (<a href="https://github.com/varfish-org/varfish-server/commit/0f839716880528e809b557b1061636e41bdf60ff">0f83971</a>)</li> </ul> |
| title | varfish-org/varfish-server: v1.4.0 |
| url | https://doi.org/10.5281/zenodo.18933605 |